PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G053200.1
Common NamePHAVU_007G053200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 728aa    MW: 81113.2 Da    PI: 6.181
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G053200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox521.2e-1665119256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         ++ ++++++q+ e+e +F+++++p+ ++r+eL+++l+L+  q+k+WFqN+R++ k
  Phvul.007G053200.1  65 QRYHRHSHDQILEMECFFKECPHPDDRQRRELSRELKLNPLQIKFWFQNKRTQVK 119
                         556789*********************************************9877 PP
2START167.11.3e-522604746206
                         HHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
               START   6 aaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                         a++el  +a ae+ +W   s   e++++de+l++f+++ +      ++ea+r s+vv+m+  +lve ++d++ qW +++     +a +++v
  Phvul.007G053200.1 260 AMKELTNLAMAEKTLWLPGScgcEILDQDEYLRSFPKGIGptplgIKIEASRHSAVVIMDYNKLVEMFMDVN-QWANMFCgiisRAWLHQV 349
                         7999**************99*****************999********************************.******99********** PP

                         ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
               START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                         ++ g      ga q+m+ae+q++splvp Rd +fvR++++ + ++w+ivd Svd+ ++ +    + +++++pSg++i++++ng+sk++w+e
  Phvul.007G053200.1 350 LEIGlteifdGASQVMSAEFQVPSPLVPvRDDYFVRFCKRRSVESWIIVDFSVDQLRPSS----FTKSRRRPSGCVITELPNGYSKIVWIE 436
                         ********************************************************9965....99999********************** PP

                         -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         hv+l+++ +h+l++s v+sgla+gak+wva l+rqce+
  Phvul.007G053200.1 437 HVELEDNEVHELYKSYVNSGLAFGAKRWVASLGRQCER 474
                         ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.52E-1749119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-1950119IPR009057Homeodomain-like
PROSITE profilePS5007115.07861121IPR001356Homeobox domain
SMARTSM003892.0E-1562125IPR001356Homeobox domain
CDDcd000861.59E-1564119No hitNo description
PfamPF000465.1E-1465119IPR001356Homeobox domain
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
SuperFamilySSF559611.65E-27246476No hitNo description
PROSITE profilePS5084836.12246477IPR002913START domain
CDDcd088753.89E-94250473No hitNo description
SMARTSM002347.6E-41255474IPR002913START domain
PfamPF018523.3E-44260474IPR002913START domain
Gene3DG3DSA:3.30.530.206.0E-6309473IPR023393START-like domain
SuperFamilySSF559612.75E-21496718No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MYHNNNTNSS NSQQQPHQST PEIPPHRTTL ENDLERNKDD EAAGNEIDVP PSSDQDPDSQ  60
MRKKQRYHRH SHDQILEMEC FFKECPHPDD RQRRELSREL KLNPLQIKFW FQNKRTQVKS  120
LHERHENNLL KAENDKLIAE NMRYKEALLH ASCPRCGGLT GEMSFDEQQL RAENMRIREE  180
IEKMSAKIQR FDGKPGSSYY NMPSQNQMMP PKSLDQGVGN YRAQTHMIGE MLGDNNEFLG  240
TLPISNDFEK NIVMEIGNVA MKELTNLAMA EKTLWLPGSC GCEILDQDEY LRSFPKGIGP  300
TPLGIKIEAS RHSAVVIMDY NKLVEMFMDV NQWANMFCGI ISRAWLHQVL EIGLTEIFDG  360
ASQVMSAEFQ VPSPLVPVRD DYFVRFCKRR SVESWIIVDF SVDQLRPSSF TKSRRRPSGC  420
VITELPNGYS KIVWIEHVEL EDNEVHELYK SYVNSGLAFG AKRWVASLGR QCERLASAMA  480
TNIPPASIGV LTNGGGRRSM MRLSERMMMS FCTAVGASTA NTWTLLTVAG EDVRVMTRKS  540
VDDPGRPSGI VLSAATSLWL PLPSTTVFSF LRSENSRNQW DILSNGGQVV ELAHIANGHD  600
TGNCVSLLRV NTQDSSQSNM IILQESCTDA TGSFVVYAPV DLMSMNAVLK GGNPDCVALL  660
PSGFAVLPDG PEPMVGSGGC LLTVAFQILV DSVPTSKLSA SSVTTVSSLI KCTVERIQAA  720
VCSGRTN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G053200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-135AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143210.10.0hypothetical protein PHAVU_007G053200g
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLV7BBL10.0V7BBL1_PHAVU; Uncharacterized protein
STRINGXP_007143210.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2300644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]