PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G065100.1
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28478.2 Da    PI: 8.956
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G065100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.91.5e-293080151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        +ri nk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gkl+ ys+
  Phvul.007G065100.1 30 ERIHNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYST 80
                        69***********************************************96 PP
2K-box66.11.2e-22101193698
               K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                         g ++e + ++ l+qel  L+ + e+Lqr+qR+llGe+Le+Ls+keL++Le+qL++ l + R++ ++ l++ i+el  k ++l+++nk L++
  Phvul.007G065100.1 101 GDDAEPQSEQCLYQELLVLRIKHESLQRTQRNLLGEELEPLSMKELHNLEKQLDRTLAQARKHLSQKLVSRIDELHGKVRNLEQINKHLES 191
                         4456778899*******************************************************************************99 PP

               K-box  97 kl 98 
                         k 
  Phvul.007G065100.1 192 KQ 193
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.1182282IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-382281IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-312394IPR002100Transcription factor, MADS-box
CDDcd002651.40E-392393No hitNo description
PROSITE patternPS0035002478IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-292444IPR002100Transcription factor, MADS-box
PfamPF003197.8E-253178IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-294459IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-295980IPR002100Transcription factor, MADS-box
PfamPF014861.2E-18107192IPR002487Transcription factor, K-box
PROSITE profilePS5129713.45109204IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MQYRERSEKG ERGAEKDQEG SMGRGKVVLE RIHNKINRQV TFSKRRNGLL KKAFELSVLC  60
DAEIALIIFS SRGKLFQYST TDINRIIERY RQCCFSMSQA GDDAEPQSEQ CLYQELLVLR  120
IKHESLQRTQ RNLLGEELEP LSMKELHNLE KQLDRTLAQA RKHLSQKLVS RIDELHGKVR  180
NLEQINKHLE SKQEIGKCTQ ISEDSTNQFE AGTAGSLRLQ QEQSSSKGKE VDTNNQWQLS  240
IKWPYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-242290169MEF2C
5f28_B3e-242290169MEF2C
5f28_C3e-242290169MEF2C
5f28_D3e-242290169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
UniProtProbable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G065100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0987530.0BT098753.1 Soybean clone JCVI-FLGm-12N24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027934986.11e-134MADS-box transcription factor 17-like isoform X1
SwissprotQ6EU397e-61MADS6_ORYSJ; MADS-box transcription factor 6
SwissprotQ8LLR16e-61MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A1S3V4F31e-130A0A1S3V4F3_VIGRR; MADS-box transcription factor 17 isoform X1
STRINGGLYMA10G38580.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.17e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Li H, et al.
    The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice.
    Cell Res., 2010. 20(3): p. 299-313
    [PMID:20038961]
  5. Zhang J,Nallamilli BR,Mujahid H,Peng Z
    OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa).
    Plant J., 2010. 64(4): p. 604-17
    [PMID:20822505]
  6. Seok HY, et al.
    Rice ternary MADS protein complexes containing class B MADS heterodimer.
    Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
    [PMID:20888318]
  7. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  8. Yadav SR,Khanday I,Majhi BB,Veluthambi K,Vijayraghavan U
    Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility.
    Plant Cell Physiol., 2011. 52(12): p. 2123-35
    [PMID:22016342]
  9. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  10. Conrad LJ, et al.
    The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice.
    Plant J., 2014. 80(5): p. 883-94
    [PMID:25279942]
  11. Zhang J, et al.
    Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice.
    J. Exp. Bot., 2015. 66(1): p. 99-112
    [PMID:25324400]
  12. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]
  13. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  14. Zhang B, et al.
    A High Temperature-Dependent Mitochondrial Lipase EXTRA GLUME1 Promotes Floral Phenotypic Robustness against Temperature Fluctuation in Rice (Oryza sativa L.).
    PLoS Genet., 2016. 12(7): p. e1006152
    [PMID:27367609]