PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G075400.1
Common NamePHAVU_007G075400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 316aa    MW: 35514.9 Da    PI: 7.2523
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G075400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83e-30181239259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++++++++tY+g+H h+
  Phvul.007G075400.1 181 ADLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCMARKQVERSNTETDMFIVTYTGDHSHP 239
                         699************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-30166241IPR003657WRKY domain
PROSITE profilePS5081132.294175241IPR003657WRKY domain
SuperFamilySSF1182905.36E-26177241IPR003657WRKY domain
SMARTSM007742.5E-36180240IPR003657WRKY domain
PfamPF031062.0E-25182239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDEDWDLFAI VRSCQSPTNT STTPIPQTTT NTTSIVKEHK YDAFSFPNTV EPITNDFHHL  60
HQFFSPFNPT TTTTTTTLNA PRINPNSPYF AQQDTQQISD HLRISPHFPP EPSTPSFNRF  120
PHHQQHQQNQ LQLLHKHEFP SPQNNSPTVS PNTQPQTPKS RKRKSQQKKM VCQVTADNLS  180
ADLWAWRKYG QKPIKGSPYP RNYYRCSSSK GCMARKQVER SNTETDMFIV TYTGDHSHPR  240
PTHRNSLAGS TRNKNPTTNP PPLPGSLSFQ AAPFSSSSSS PPHSPTSPSE DPPENGDLEP  300
DPDMETDVDD DGDIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-21164242280Disease resistance protein RRS1
5w3x_D5e-21164242280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G075400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-146AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143479.10.0hypothetical protein PHAVU_007G075400g
TrEMBLV7BEZ90.0V7BEZ9_PHAVU; Uncharacterized protein
STRINGXP_007143479.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-45WRKY DNA-binding protein 27