PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G079600.2

Common Name

PHAVU_007G079600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Trihelix

Protein Properties

Length: 451aa MW: 51421.2 Da PI: 6.741

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G079600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.8	4.5e-26	120	216	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 +Wt+++v++Li+a+++++e++ + +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ ++++++ Phvul.007G079600.2 120 KWTDKMVKLLITAVSYIGEDVTGDGggsgsgrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVE 210 7************99999996534556678889999********************************************5588888 PP trihelix 78 tcpyfd 83 + +++d Phvul.007G079600.2 211 KPALLD 216 777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-23	118	245	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MEGNLPQGGI IQGGTSFGGF NLPGSIRVQH QAQHPHTMHQ HQSHPRQGSS VHSTVHDVFP 60 LTMGTLQNCD QTISMTEFSK GDRSKNSASE EDEPSFTEDG VDCHHEAGRG KKGSPWQRVK 120 WTDKMVKLLI TAVSYIGEDV TGDGGGSGSG RRKFAVLQKK GKWKSVSKVM AERGYHVSPQ 180 QCEDKFNDLN KRYKKLNDML GRGTSCQVVE KPALLDVIDF LSDKEKDDVR KILSSKHLFY 240 EEMCSYHNGN RLHLPHDPAL QRSLQLALRN RDDHDNDDMR RSHHDDQGED DPDVEIDDHD 300 DFEENCTSHG DSRGIHAPLG GSMKKPKQGQ DQEDCNTFGN SLNCQDYNRS SYPHGQMVQS 360 DVNQGLPESM RSAWLQKQWV ESRFLQLEEQ KLQIQVEMLE LEKQRFKWQR FSKKKDRELE 420 KLSLENERLK LENERLALEL KRKELSTGFK *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MEGNLPQGGI IQGGTSFGGF NLPGSIRVQH QAQHPHTMHQ HQSHPRQGSS VHSTVHDVFP  60
LTMGTLQNCD QTISMTEFSK GDRSKNSASE EDEPSFTEDG VDCHHEAGRG KKGSPWQRVK  120
WTDKMVKLLI TAVSYIGEDV TGDGGGSGSG RRKFAVLQKK GKWKSVSKVM AERGYHVSPQ  180
QCEDKFNDLN KRYKKLNDML GRGTSCQVVE KPALLDVIDF LSDKEKDDVR KILSSKHLFY  240
EEMCSYHNGN RLHLPHDPAL QRSLQLALRN RDDHDNDDMR RSHHDDQGED DPDVEIDDHD  300
DFEENCTSHG DSRGIHAPLG GSMKKPKQGQ DQEDCNTFGN SLNCQDYNRS SYPHGQMVQS  360
DVNQGLPESM RSAWLQKQWV ESRFLQLEEQ KLQIQVEMLE LEKQRFKWQR FSKKKDRELE  420
KLSLENERLK LENERLALEL KRKELSTGFK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G079600.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007143533.1	0.0	hypothetical protein PHAVU_007G079600g
Refseq	XP_007143534.1	0.0	hypothetical protein PHAVU_007G079600g
TrEMBL	V7BF51	0.0	V7BF51_PHAVU; Uncharacterized protein
STRING	XP_007143533.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-148	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Phvul.007G079600.2
Entrez Gene	18625225