PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G079700.1
Common NamePHAVU_007G079700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 719aa    MW: 79820.6 Da    PI: 6.6895
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G079700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.16.5e-30136219186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg++++  ++ +t+++fd+l+
  Phvul.007G079700.1 136 RWPRQETLALLRIRKDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGK--QDGKTYRFFDELQ 219
                         8********************************************************************95..67778******98 PP
2trihelix102.53.3e-32534619187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r++++++++++  k+plWee+s+ mr+ g+ r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  Phvul.007G079700.1 534 RWPKVEVQALIKLRTNLDSKYQENGPKGPLWEEISSSMRKLGYIRNAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 619
                         8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.3E-4133195IPR001005SANT/Myb domain
PfamPF138374.1E-20135221No hitNo description
PROSITE profilePS500907.015135193IPR017877Myb-like domain
CDDcd122036.35E-25135200No hitNo description
SMARTSM007170.18531593IPR001005SANT/Myb domain
PfamPF138373.0E-21533620No hitNo description
PROSITE profilePS500906.888533591IPR017877Myb-like domain
CDDcd122038.18E-28533598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MMQNITAIET LTPFITLIIP RVYYRYNKIN KQISSPRKER ERERGGIAVC CCNCCGAVLE  60
KRERDPKETM LGDSAVLGAG GGSGGGEGGA SVDAVGGVTH EGAVVASGGG GGVGSNSGDD  120
ERGRIDEGER SFGGNRWPRQ ETLALLRIRK DMDVAFRDAS VKGPLWEEVS RKMAELGYHR  180
SSKKCKEKFE NVYKYHKRTK EGRSGKQDGK TYRFFDELQA LENHTPTPHS PNPSPKPPQS  240
APSRVIATTA ASVSLPIATA TASSLSLPIP TTITTVPMQP ILSNTTLTST VPHITVPSTT  300
TLPITIPQPI LTTPSIHLSI PSNPPTNPTI NTTPPPSFPT LPTDTFSNSS SSSTSSDETL  360
EGRRKRKRKW KDFFERLMKE VIEKQEDLQK KFLEAIEKRE HDRIAREEAW RVQEMQRINR  420
EREILAQERS IAAAKDAAVM SFLQKIAEQQ NLGQALSNIN LVQQPPHQQP QPPLQQLPPS  480
SVAPPPAQQP LPAVVTQPVV LPVFSQVTNM EIVKVDNNNN NNSCENFTPS SSSRWPKVEV  540
QALIKLRTNL DSKYQENGPK GPLWEEISSS MRKLGYIRNA KRCKEKWENI NKYFKKVKES  600
NKRRPEDSKT CPYFHQLDAL YRERSKVEGV AAAVKPESTV APLMVRPEQQ WPPQEESMRD  660
RDIRMEDVEN EEDEYEEERD GEGEEEEDDE EDEEGGGGGK YEIVANKTSG GSVGASTE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362367RRKRKR
2362368RRKRKRK
3363368RKRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G079700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143535.10.0hypothetical protein PHAVU_007G079700g
TrEMBLV7BCG30.0V7BCG3_PHAVU; Uncharacterized protein
STRINGXP_007143535.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-61Trihelix family protein