PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G079700.2
Common NamePHAVU_007G079700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 650aa    MW: 71789.2 Da    PI: 5.9415
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G079700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.35.6e-3067150186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg++++  ++ +t+++fd+l+
  Phvul.007G079700.2  67 RWPRQETLALLRIRKDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGK--QDGKTYRFFDELQ 150
                         8********************************************************************95..67778******98 PP
2trihelix102.72.9e-32465550187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r++++++++++  k+plWee+s+ mr+ g+ r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  Phvul.007G079700.2 465 RWPKVEVQALIKLRTNLDSKYQENGPKGPLWEEISSSMRKLGYIRNAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 550
                         8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.3E-464126IPR001005SANT/Myb domain
PROSITE profilePS500907.01566124IPR017877Myb-like domain
PfamPF138373.5E-2066152No hitNo description
CDDcd122032.51E-2566131No hitNo description
SMARTSM007170.18462524IPR001005SANT/Myb domain
PfamPF138372.6E-21464551No hitNo description
CDDcd122032.97E-28464529No hitNo description
PROSITE profilePS500906.888464522IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MLGDSAVLGA GGGSGGGEGG ASVDAVGGVT HEGAVVASGG GGGVGSNSGD DERGRIDEGE  60
RSFGGNRWPR QETLALLRIR KDMDVAFRDA SVKGPLWEEV SRKMAELGYH RSSKKCKEKF  120
ENVYKYHKRT KEGRSGKQDG KTYRFFDELQ ALENHTPTPH SPNPSPKPPQ SAPSRVIATT  180
AASVSLPIAT ATASSLSLPI PTTITTVPMQ PILSNTTLTS TVPHITVPST TTLPITIPQP  240
ILTTPSIHLS IPSNPPTNPT INTTPPPSFP TLPTDTFSNS SSSSTSSDET LEGRRKRKRK  300
WKDFFERLMK EVIEKQEDLQ KKFLEAIEKR EHDRIAREEA WRVQEMQRIN REREILAQER  360
SIAAAKDAAV MSFLQKIAEQ QNLGQALSNI NLVQQPPHQQ PQPPLQQLPP SSVAPPPAQQ  420
PLPAVVTQPV VLPVFSQVTN MEIVKVDNNN NNNSCENFTP SSSSRWPKVE VQALIKLRTN  480
LDSKYQENGP KGPLWEEISS SMRKLGYIRN AKRCKEKWEN INKYFKKVKE SNKRRPEDSK  540
TCPYFHQLDA LYRERSKVEG VAAAVKPEST VAPLMVRPEQ QWPPQEESMR DRDIRMEDVE  600
NEEDEYEEER DGEGEEEEDD EEDEEGGGGG KYEIVANKTS GGSVGASTE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298RRKRKR
2293299RRKRKRK
3294299RKRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G079700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143536.10.0hypothetical protein PHAVU_007G079700g
TrEMBLV7BD850.0V7BD85_PHAVU; Uncharacterized protein
STRINGXP_007143535.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-62Trihelix family protein