PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G086600.1
Common NamePHAVU_007G086600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 149aa    MW: 16520.8 Da    PI: 6.5093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G086600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-163072349
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                        y GVr ++ +gr++AeIr p++   + r++lg+f+taeeAa a++  
  Phvul.007G086600.1 30 YLGVRKRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAIAYDLS 72
                        77******.**********865...5******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.1522986IPR001471AP2/ERF domain
SMARTSM003802.7E-282992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-262986IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-202987IPR016177DNA-binding domain
CDDcd000181.32E-283085No hitNo description
PRINTSPR003675.9E-93041IPR001471AP2/ERF domain
PfamPF008475.5E-93171IPR001471AP2/ERF domain
PRINTSPR003675.9E-95268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSQTENPMEN LPALIYKNPI RRSSRRSTMY LGVRKRPWGR YAAEIRNPYT KERHWLGTFD  60
TAEEAAIAYD LSSIKICGIN ARTNFHYPFV SLPPPPMALP PPPLPPTQEL DQSVGVCPEM  120
NAAFDGDDES LVIASILQSF SSSGNCSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152685262ATERF1
3gcc_A2e-152685262ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G086600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-156AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143615.11e-107hypothetical protein PHAVU_007G086600g
TrEMBLV7BCP61e-106V7BCP6_PHAVU; Uncharacterized protein
STRINGXP_007143615.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145131317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.15e-29ERF family protein