PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G093100.2
Common NamePHAVU_007G093100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 1625aa    MW: 176892 Da    PI: 5.8989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G093100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-08782823346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +WT++E e +++ ++ +G++ +++Ia+ +  ++t  +c+++++k
  Phvul.007G093100.2 782 PWTPQEREVFLEKFAAFGKN-FRKIASFLD-HKTIADCVEFYYK 823
                         8*****************99.*********.***********98 PP
2Myb_DNA-binding32.22.6e-109701009344
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                           WT +E   +++av  +G++ +++Iar++g +R+ +qck ++
  Phvul.007G093100.2  970 DWTDDERAAFLQAVSSFGKD-FAKIARRVG-TRSQEQCKVFF 1009
                          5*****************99.*********.********766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.65E-14766826IPR009057Homeodomain-like
PROSITE profilePS5129315.892778829IPR017884SANT domain
SMARTSM007174.8E-8779827IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-5781826IPR009057Homeodomain-like
PfamPF002491.6E-5781823IPR001005SANT/Myb domain
PROSITE profilePS5129312.7259661027IPR017884SANT domain
SMARTSM007171.3E-89671015IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-99681017IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-79701009IPR009057Homeodomain-like
PfamPF002495.5E-99701009IPR001005SANT/Myb domain
CDDcd001678.14E-89711009No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1625 aa     Download sequence    Send to blast
MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSSHHREF NRWGPTEFRR PPGHGKQGGW  60
HLFSEDSGHG YAISRSSSDK ILEEDSRPSI SRGDGKYGRS SRENRGAFAQ RDWRGHSWEP  120
SNGTMNLPRR PQDVNNDQRA VDDALAYSSH PHSDFGNSWD QHHLKDQHEK IGSVNGMGTG  180
PRSDRENSLG DWKPLKWTRS GSLSSRGSGF SHSSSSRSMG AADSHEARAE LQTKSAAANE  240
SHSGEAAACA TSSVPSEDTA SRKKPRLNWG EGLAKYEKKK VEVPEPSANK DGPVLSASIT  300
EPCNFLSTSL VDKSPKVTGF SECASPATPS SVACSSSPGM DDKLFGKTAN VDNDVSNFIC  360
SPAPLSENNL QRFPFNLEKF DIGSLNNLGS SIIELVKSDD PTSVDSGPMR SNAINKLLIW  420
KADISKVLEM TESEIDLLEN ELRSLKSESR ETCQFPVSLD SQMLGCDEKS CEEHVGVSDQ  480
VTRPVPLNIV DDPNMEKVPL STNLLSIHES VKEEDIDSPG TATSKFVEPP PSIKSVSCGT  540
GGYVSFSRDV DSVPSAAVNC LIPCSARKDV SVCVSSVDGK TSMEVNDSMD ILWGTIISSN  600
KESANKASEV FDNLLPKDCC KIGKMETSSD TCNHTFIREK FAEKKRFARF KERVIALKFR  660
ALHHLWKEDM RLLSIRKCRP KSHKKNELSV RTTCNGNQKN RSSIRSRFPF PGNHLSLVPT  720
SEMINFTGKL LSESQVKVQR NTLKMPALIL DEKEKIISKF VSSNGLVEDP LAIEKERSMI  780
NPWTPQEREV FLEKFAAFGK NFRKIASFLD HKTIADCVEF YYKNHKSDCF EKLKKQDVGK  840
LGKSFSAKTD LLASGNKKIR AGSSLLGGYG KVKTSRVEDF IEKSGSFDIL GDERETAAAA  900
DVLAGICGSL SSEAISSCIT SSVDPVEGSR DRKFLKVNPL YKLPMTPDVT QDVDDETCSD  960
ESCGEMDPTD WTDDERAAFL QAVSSFGKDF AKIARRVGTR SQEQCKVFFS KGRKCLGLDL  1020
MRPISENVGS PVNDDANGGE SDTDDACVVE TGSVVGTEKS GTKTDEDLPL YGTNTFNDES  1080
NPVQARNLSA ELNESKGTNG TEVDIEDANL VSDACAIDID SKQGCDGSEF AACGSVSGQA  1140
MSDSTENGKD KANKLGGASI ELISVPDTSE PCESNSFVGD RMVVSEVSSD RLGNELERQR  1200
VSSPRCLDDR DNKQEADSGG IVDLKSPGHM LSSTVVNASL SSFGNSCSGL SSSTENKHGP  1260
LRKASPLSMD DHQASSNSSL QNTVASDIQC EKTASQDRLS STCDIQVSTD DKPPITGNSS  1320
DHVDAGSILQ GYPLQAPIKK EINGDMNSSS SATELHLLSQ KNEQPDDQTK KLQSSDSDKA  1380
SRNGDVKLFG KILTNPSSAQ KPNVGAKGSE ENGTHHPKFS KPSSMKFTGH SADGNVKILK  1440
FDCNDYVGLE NVPMRSYGYW DGSRIQTGLS SLPDSAILLA KYPAAFSNYP TSSAKLEQPS  1500
LQTFSKNNNE RLLNGSNAVI DYQMFRRDGP KVQPFMVDVK HCQDVFSEMQ RRNGFEAISS  1560
LQQQSRGVMG MNGVGRPGIL VGGSCSGVSD PVAAIKMHYS NSDKYGGQSG SIAREDESWG  1620
GKGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C2e-18740831494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D2e-18740831494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G093100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143687.10.0hypothetical protein PHAVU_007G093100g
TrEMBLV7BGV30.0V7BGV3_PHAVU; Uncharacterized protein
STRINGXP_007143686.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-169MYB family protein