PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G096500.1
Common NamePHAVU_007G096500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 1517aa    MW: 168720 Da    PI: 7.0596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G096500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004714011426123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                          +kC    C +sF++k +L  H r+ +
  Phvul.007G096500.1 1401 HKCDldGCRMSFKTKAELLLHKRNlC 1426
                          799999****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005458.2E-141555IPR003349JmjN domain
PROSITE profilePS5118313.551657IPR003349JmjN domain
PfamPF023754.5E-141750IPR003349JmjN domain
PROSITE profilePS5118434.489293462IPR003347JmjC domain
SMARTSM005581.6E-45293462IPR003347JmjC domain
SuperFamilySSF511971.51E-26294460No hitNo description
PfamPF023731.7E-35326445IPR003347JmjC domain
SMARTSM003551114011423IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0514241453IPR007087Zinc finger, C2H2
SMARTSM003550.3414241448IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.15E-614251461No hitNo description
PROSITE patternPS00028014261448IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-514301454IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.0314541483IPR007087Zinc finger, C2H2
SMARTSM003550.001614541478IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-1014551478IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014561478IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-1014641514No hitNo description
Gene3DG3DSA:3.30.160.609.7E-1114791507IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.26314841515IPR007087Zinc finger, C2H2
SMARTSM003550.6614841510IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014861510IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1517 aa     Download sequence    Send to blast
MGSVEIPNWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA SGFGICKIIP PLPKPSKKYV  60
FSNLNRSLLK CPDLGTDNSS LGVCNSLKTS SGDGSNDGVS RAVFTTRHQE LGQSQSVKKA  120
KGTVQNPLSG VHKQVWQSGE VYTLEQFESK SKSFARSLLG SVKDVSPLVI ESMFWKATLE  180
KPIYVEYAND VPGSAFEESK GQFHYSHRRL RKRTYYKSRL DSSDCKQTVM GCGRDSQTDE  240
TKGASVLSDA DTCLRMTKSV ATGSTFSSNE DSQSFKEKST DTGNDMQGTA GWKLSNSPWN  300
LQVIARSSGS LTRFMPDDIP GVTSPMVYIG MLFSWFAWHV EDHELHSLNF LHTGSSKTWY  360
AVPGDYAFAF EEVIRTEGYG GDIDHLAALK LLGEKTTLLS PEVIVASGIP CCRLTQNPGE  420
FVVTFPRAYH VGFSHGFNCG EAANFGTPQW LSVAKEAAVR RAAMNYLPML SHQQLLYLLT  480
MSFISRVPRT LLPGVRSSRL RDRQKEEREF SVKQAFIEDM LQENKLLSIL LGKEAAKRAV  540
LWNADLLPDS SKDFQLPDLT CTTGTSLANI SNISSAEKNS HYLLDDEMSL YLDCLTNIDI  600
GGDDLPYHFQ TDSGALACVG CGILGFPFMA VIQPTEKLTM ELLPDNHLIQ VSSPDSTTGL  660
HSSISRDLSV SELSSIKEMP DHSLNKCSKC WDTSSKFFRP RIFCLGHAVQ IVEMLQSKGG  720
ANVLIICHSD YQKIKAHAKE VAEEIHGAFN YNEIALDTAS PENLTLIDLA VDGEELDQCE  780
DWTSTLGINL RNWVHARNNA PSKQVPWTLE TLFYDNCPAS NVLALNWLSR RSRSKRSSHL  840
AQTKSSYSIE RKKDDRLGGR INDSIAEKKL IQYSRRKFKS KQRSFPVANM VCEFQEKSKN  900
VSATLSADHN NCVSKTLEAE NLSTECALPC ASASTEMSAM HPEIQIAEIP ISTKMNAAKS  960
QPSNSIPGHI LMIEEVGAEI ENQTMQESHV DRNNDLTLSH SKMHCNTSVS EICSKESQDC  1020
QDKKCSSAFS NATDGNIEMI RKTEIEEAVM IDSNCNRLIL DDEGHQEYQS TYKSNKEEAA  1080
LSTASMVNQS TLASMDGNVE SPNNNYISER VGNPIFLERT TEEEIDSICE TDKEPRIDGG  1140
PISEHTPNEV CEVGREFYAS ADLHNNGILD GEMQQVTQGG KNSKREISQS THVSAKQRCP  1200
SSVQCGIENM NKINEEPVSS YAAKVENKSV TSIELGCSEV SVETCTNKDS CIQFIPDKEK  1260
KMEIQSVNAS IKDSSLSMQE GSKIGKEIYV ADNINEIKAD LSQDKRGLES CELATEVPRL  1320
YAGKKKKRKV ERTRRNESNS DNFIRSPCEG LRPRAGKIAA GKSRVEINQV DKENQVAKRA  1380
RRSSEVLVPC KNKKDGVKKS HKCDLDGCRM SFKTKAELLL HKRNLCPYEG CGKKFSSHKY  1440
ALLHQRVHDD ERPLKCPWKG CSMSFKWAWA RTEHIRVHTG EKPYHCKVEG CGLSFRFVSD  1500
FSRHRRKTGH HVKPPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-55276476137346Transcription factor jumonji (Jmj) family protein
6ip4_A3e-55276476137346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1830835RSRSKR
213231328KKKKRK
313241329KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G096500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143729.10.0hypothetical protein PHAVU_007G096500g
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLV7BFV10.0V7BFV1_PHAVU; Uncharacterized protein
STRINGXP_007143729.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]