PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G114300.1
Common NamePHAVU_007G114300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ZF-HD
Protein Properties Length: 198aa    MW: 22395.4 Da    PI: 8.4926
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G114300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.45.5e-311571259
         ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                        + +rY eClkNhAa++Gg+a+DGCgEf+++ geegt ++lkC+AC+CHRnFHR+e e+
  Phvul.007G114300.1 15 KVIRYTECLKNHAARIGGNATDGCGEFIAD-GEEGTLEGLKCSACNCHRNFHRKEIES 71
                        5789*************************8.999********************9876 PP
2Homeobox14.56e-05131186152
                         TT--SS--HHHHHHHHHHHH.....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFe.....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                         +r Rt+ft+eq e +  lF+     + ++++++  ++  +++g++ r+ kvW +N +
  Phvul.007G114300.1 131 KRFRTKFTQEQKEKML-LFAeragwRLQKLDESVVQKFCQEIGIKRRVLKVWIHNNK 186
                         789***********95.6665777789***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.9E-281769IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-201770IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.8E-281869IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.3971968IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-28120191IPR009057Homeodomain-like
SuperFamilySSF466893.54E-18124189IPR009057Homeodomain-like
TIGRFAMsTIGR015654.3E-27130187IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MESSNLHADK RADKKVIRYT ECLKNHAARI GGNATDGCGE FIADGEEGTL EGLKCSACNC  60
HRNFHRKEIE SSDSYFTPLM IMPDTTQIGP IWAHLSPNKS GSISPSDVSD EKDCEDGMTK  120
EEGNPTEKVK KRFRTKFTQE QKEKMLLFAE RAGWRLQKLD ESVVQKFCQE IGIKRRVLKV  180
WIHNNKNTFV KRNPSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-241311881875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G114300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143929.11e-148hypothetical protein PHAVU_007G114300g
SwissprotO647224e-60ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLV7BGD81e-146V7BGD8_PHAVU; Uncharacterized protein
STRINGXP_007143929.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-62homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]