PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G118100.1
Common NamePHAVU_007G118100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 358aa    MW: 40233 Da    PI: 6.2394
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G118100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30133191159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +dDgy+WrKYGqK++kg+ fpr+YY+Cts+gC+v+k+ver++++ k v++tYeg+Hnhe
  Phvul.007G118100.1 133 VDDGYRWRKYGQKTIKGNLFPRAYYKCTSSGCCVRKHVERDSRNRKNVITTYEGKHNHE 191
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-30127193IPR003657WRKY domain
PROSITE profilePS5081132.053128193IPR003657WRKY domain
SuperFamilySSF1182903.4E-26130193IPR003657WRKY domain
SMARTSM007741.1E-33133192IPR003657WRKY domain
PfamPF031062.0E-24134191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MNCSGCEGLG STQVVEQVHS SNSNDEIRVK FPFDLNAEVD EVDSISCTEE ACSKVGESIL  60
TLPSTNLEGT AEDVVPTEVE NEDRASVVEG GTTTSESRKR KRSVEEYEKG NNVRSFRGNT  120
LTVNVESRRK TMVDDGYRWR KYGQKTIKGN LFPRAYYKCT SSGCCVRKHV ERDSRNRKNV  180
ITTYEGKHNH EQPSPKNPKK HCAEDEEDEQ DEYEEDEELA IPASNALWSF RLSESRNFLN  240
TPHPAQPHTP HPAQPHTPHP AQPHTLQLSR NDTNPGFAYT RSVWRNCFGS FNSNMNIGSS  300
SYSPQIHYSS FLNNTNTIPY RFYGLDLNPY AAPQPQFPVI PSSSEVFSRS RVNANGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-271321941678Probable WRKY transcription factor 4
2lex_A8e-271321941678Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G118100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150412e-78AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143972.10.0hypothetical protein PHAVU_007G118100g
TrEMBLV7BHM60.0V7BHM6_PHAVU; Uncharacterized protein
STRINGXP_007143972.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1873256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.14e-29WRKY DNA-binding protein 2