PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G118200.1
Common NamePHAVU_007G118200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 366aa    MW: 41420.8 Da    PI: 5.9054
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G118200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30140198159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +dDgy+WrKYGqK++kg+ fpr+YY+Ct+agC+vkk+ver+++++k ++ tYeg+Hnhe
  Phvul.007G118200.1 140 VDDGYHWRKYGQKPIKGNVFPRAYYKCTTAGCSVKKHVERDSRNQKNLISTYEGRHNHE 198
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-29130200IPR003657WRKY domain
PROSITE profilePS5081131.112135200IPR003657WRKY domain
SuperFamilySSF1182901.96E-25136200IPR003657WRKY domain
SMARTSM007741.9E-32140199IPR003657WRKY domain
PfamPF031061.6E-23141198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MCQQSLAPEL NLLHASPTKV IEQVHSSNSN DVKMLKVPFD LNAKFDEEDQ ISCSNEAHAK  60
VGCSEAIQPL PSSYLEVTPE DVPPTDNDNE DRSSVVGGGS HTSQNRKRKR SVEECEKGRG  120
KAFRRDNVEV KIKRQNENTV DDGYHWRKYG QKPIKGNVFP RAYYKCTTAG CSVKKHVERD  180
SRNQKNLIST YEGRHNHEQP TFRNPSKQYE DDEDDEEDEE DEELAAVAAA NTLLTFGSPV  240
NFFNTSNLAE PRVHTLQLLP NDPNPEFFNR FMRPNHLGSF NYNMNIGSSS YTPRMHYSSF  300
MNNAVTMPYP SYGPNLDHYA APQPRLPIPP PFNNMTFSFG VQCFVSEKQV QEIVAGTSYL  360
IDSYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-241402001777Probable WRKY transcription factor 4
2lex_A4e-241402001777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G118200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-61AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143973.10.0hypothetical protein PHAVU_007G118200g
TrEMBLV7BDR40.0V7BDR4_PHAVU; Uncharacterized protein
STRINGXP_007143973.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1873256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-25WRKY DNA-binding protein 2