PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G125400.1
Common NamePHAVU_007G125400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 181aa    MW: 20454.4 Da    PI: 5.5357
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G125400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000143254123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H++ H
  Phvul.007G125400.1 32 YECTFCKRGFTNAQALGGHMNIH 54
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-52657IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.98E-72958No hitNo description
SMARTSM003550.00973254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4683259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MNSEKPVSPE NLSDENDQEE AHDDTGGTKR SYECTFCKRG FTNAQALGGH MNIHRRDRAK  60
AKQLTLDASP SMNKFNSDES IVFPFVSETL NQPARPYSIL ESQRNCDMQF HPPAPASAFY  120
YELYDPRSRS LTFNQELGGA NLSLQIGQTH HVDDNIHQVR RGNQKDNEVD LELRLGHDPY  180
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15462RRDRAKAKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G125400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144064.11e-134hypothetical protein PHAVU_007G125400g
TrEMBLV7BGP51e-133V7BGP5_PHAVU; Uncharacterized protein
STRINGXP_007144064.11e-134(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-17C2H2 family protein