PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G128000.1
Common NamePHAVU_007G128000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 143aa    MW: 15911.7 Da    PI: 9.3397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G128000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP270.33.3e-221566256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrdps++g   r++lg+f+taeeAa+a+++a+ +l+g+
  Phvul.007G128000.1 15 RYRGVRRRP-WGKYAAEIRDPSKQG--SRVWLGTFDTAEEAARAYDRAAFNLRGH 66
                        6********.**********98865..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-241574IPR016177DNA-binding domain
PfamPF008475.4E-161566IPR001471AP2/ERF domain
CDDcd000189.36E-311573No hitNo description
SMARTSM003807.6E-391579IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-331574IPR001471AP2/ERF domain
PROSITE profilePS5103224.8691573IPR001471AP2/ERF domain
PRINTSPR003673.5E-121627IPR001471AP2/ERF domain
PRINTSPR003673.5E-123955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEENQKGKQG KEEVRYRGVR RRPWGKYAAE IRDPSKQGSR VWLGTFDTAE EAARAYDRAA  60
FNLRGHLATL NFPSEYYSQI RGSPPYPPHL APPSSSSSHA AGCTSSSGAY HRPVFEIPCL  120
DDKVLEDLLG QSEENKKKKK GE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-3111401131Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G128000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144092.11e-102hypothetical protein PHAVU_007G128000g
SwissprotQ9LTC56e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLV7BHZ71e-101V7BHZ7_PHAVU; Uncharacterized protein
STRINGXP_007144092.11e-102(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-31ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]