PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G131200.1
Common NamePHAVU_007G131200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 491aa    MW: 54041.2 Da    PI: 5.2047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G131200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.61.3e-1281194761374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                         lv++L++cA+ v+ gdl+ a +l+  ++ l +       + ++a yf  AL++r+++ +       ++ +ts     e+   ++ ++e++P
  Phvul.007G131200.1 119 LVHTLITCADSVQRGDLAFAGSLIDSMQALLAHVNtsCGIGKVAGYFIDALRRRISSPQ------NAAFTTS---PYENDVLYHHYYEACP 200
                         689**************************944444136899***************922......2222222...3444456788****** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         +lkf+h+taNqaIlea++g+++vH+iDf+++qGlQWpaL+qaLa Rp+gppslR+Tgvg+p+++++++l+e+g rLa++A++++v+f f+ 
  Phvul.007G131200.1 201 YLKFAHFTANQAILEAFSGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPSLRLTGVGPPSPDERDTLREIGARLAELAHSVNVRFTFRG 291
                         ******************************************************************************************* PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         ++a rled+++++L+v+p+Ea+aVn+++qlhr+l       s +d+vL  ++sl+Pk+v+vveqea+hn+e Flerf+eal+yys++fdsl
  Phvul.007G131200.1 292 VAAWRLEDVKPWMLQVSPKEAVAVNSIMQLHRVL------GSGIDAVLGWIRSLNPKIVTVVEQEANHNGEGFLERFTEALHYYSTVFDSL 376
                         9888*****************************9......556789********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ea      e ++ + +++l+rei+nvv+ceg +r+erhe l+kWrerl +aG++p++l+++a+kqa++ll  ++ +gy vee++g+l+lgW
  Phvul.007G131200.1 377 EAC---SVEPDKGLAEMYLQREICNVVCCEGPARVERHEPLAKWRERLAKAGLRPLHLGSNAYKQASMLLTLFSAEGYCVEENQGCLTLGW 464
                         998...357788889999************************************************************************* PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++rpL+++SaW+
  Phvul.007G131200.1 465 HSRPLIAASAWQ 476
                         ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.6E-241483IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011296.1E-71490No hitNo description
PROSITE profilePS5098562.69893456IPR005202Transcription factor GRAS
PfamPF035144.4E-126119476IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MNGSSSESKT RDMDGQLAGL GYKVRSSELC QVAENMERLE NAINTVNSSR DISQVVSDAL  60
LYDPSNIGLG SWVDTLLSEL DQTVSLPYDL SSDLPDLPTD PNRQLGMVTT VEEDSGIRLV  120
HTLITCADSV QRGDLAFAGS LIDSMQALLA HVNTSCGIGK VAGYFIDALR RRISSPQNAA  180
FTTSPYENDV LYHHYYEACP YLKFAHFTAN QAILEAFSGH DCVHVIDFNL MQGLQWPALI  240
QALALRPGGP PSLRLTGVGP PSPDERDTLR EIGARLAELA HSVNVRFTFR GVAAWRLEDV  300
KPWMLQVSPK EAVAVNSIMQ LHRVLGSGID AVLGWIRSLN PKIVTVVEQE ANHNGEGFLE  360
RFTEALHYYS TVFDSLEACS VEPDKGLAEM YLQREICNVV CCEGPARVER HEPLAKWRER  420
LAKAGLRPLH LGSNAYKQAS MLLTLFSAEG YCVEENQGCL TLGWHSRPLI AASAWQAAPL  480
REGETVRFQR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6511247512378Protein SCARECROW
5b3h_A2e-6511247511377Protein SCARECROW
5b3h_D2e-6511247511377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G131200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144131.10.0hypothetical protein PHAVU_007G131200g
SwissprotQ84TQ71e-156GAI_GOSHI; DELLA protein GAI
TrEMBLV7BEY20.0V7BEY2_PHAVU; Uncharacterized protein
STRINGXP_007144131.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-155GRAS family protein