PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G135900.1
Common NamePHAVU_007G135900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 204aa    MW: 23059 Da    PI: 8.052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G135900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-18110160255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp   + k  r++lg+++++ +Aaka++ a+ +++g
  Phvul.007G135900.1 110 RYRGVRRRP-WGKFAAEIRDP---KrKGSRVWLGTYDSEIDAAKAYDCAAFRMRG 160
                         7********.**********8...4334**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-35110174IPR001471AP2/ERF domain
PfamPF008474.3E-13110160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-31110169IPR001471AP2/ERF domain
PROSITE profilePS5103224.223110168IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-22110170IPR016177DNA-binding domain
PRINTSPR003673.9E-13111122IPR001471AP2/ERF domain
CDDcd000182.19E-23118168No hitNo description
PRINTSPR003673.9E-13150170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MATEEEISTL KLMRQYLLGD ISDPFLANLI PVKVEDSSSE LDFGSNFSEQ SSFYRFLECF  60
DFEADKEVTG LTFHHKIQNS IATSPLQNSD LADPTVSVKK EATCCYETRR YRGVRRRPWG  120
KFAAEIRDPK RKGSRVWLGT YDSEIDAAKA YDCAAFRMRG QKAVLNFPLE AGKSHPEPNS  180
CGRKRRRECT TVATTSSHVC HEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-27109169161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182186RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G135900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144191.11e-152hypothetical protein PHAVU_007G135900g
TrEMBLV7BF671e-151V7BF67_PHAVU; Uncharacterized protein
STRINGXP_007144191.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.18e-33ERF family protein