PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G140500.1
Common NamePHAVU_007G140500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 589aa    MW: 64865.2 Da    PI: 4.3673
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G140500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.11e-5061313128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         pGfrFhPtdeelvv+yLk+k++g+  +  ++i+ vd+yk+ePwdLp  +k+k+++ ewyfFs  d+ky +g+r+nrat++gyWk+tgkd++
  Phvul.007G140500.1   6 PGFRFHPTDEELVVFYLKRKITGNLSRY-DHIAVVDVYKLEPWDLPpmSKLKTKDLEWYFFSVLDRKYGNGSRTNRATEKGYWKTTGKDRP 95 
                         8***********************9888.89**************96458888888*********************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v + +++ vg+kktLv++ grap+g++t+Wvmhey++
  Phvul.007G140500.1  96 VAH-GDRIVGMKKTLVYHIGRAPHGRRTNWVMHEYKM 131
                         ***.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-594154IPR003441NAC domain
PROSITE profilePS5100555.2644154IPR003441NAC domain
PfamPF023657.6E-276130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MAPIGPGFRF HPTDEELVVF YLKRKITGNL SRYDHIAVVD VYKLEPWDLP PMSKLKTKDL  60
EWYFFSVLDR KYGNGSRTNR ATEKGYWKTT GKDRPVAHGD RIVGMKKTLV YHIGRAPHGR  120
RTNWVMHEYK MLDEELTRAG TVLDVYVVCR IFEKSGSGPK NGAKYGAPLD EKEWDAEDEN  180
EQKKVVPLPE TAHHVVAPLT ETPHNVVSPP LPVAAAVAPP LVADDEFWNI GAFLETNDLD  240
MELDLTDMIG NATFPSSNFH HGECSTHAEN SQELIKDQEP LEGTFGISRL ENGQPLDMAE  300
QQDMGTSSVR DGDDGELSEI ENLLNFNYAS DNMDLDLYFD ATQDLPAADD GSFLETNDLA  360
IGNEGNPTEA DPSANDMLDE YLALPDDDIC NYISFDLPQI PESENSDSNQ GSPLTQQTLE  420
GETADKAVVS KHDSDAQTSK EAFSVQNREE EKLAPENSNP FVKEAYGWLA SIPAAPAHAF  480
EFPAKDITLG IHSAAQSSHT AHITTGMISI TDITFRGNAM DWPMGKSGGF NTAISTEFSQ  540
PDVNCAALIP LSGKTAFVLS HGWIFLTGFS VLILSLSFKI GSMMYTGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-46616019171NO APICAL MERISTEM PROTEIN
1ut4_B8e-46616019171NO APICAL MERISTEM PROTEIN
1ut7_A8e-46616019171NO APICAL MERISTEM PROTEIN
1ut7_B8e-46616019171NO APICAL MERISTEM PROTEIN
3swm_A9e-46616022174NAC domain-containing protein 19
3swm_B9e-46616022174NAC domain-containing protein 19
3swm_C9e-46616022174NAC domain-containing protein 19
3swm_D9e-46616022174NAC domain-containing protein 19
3swp_A9e-46616022174NAC domain-containing protein 19
3swp_B9e-46616022174NAC domain-containing protein 19
3swp_C9e-46616022174NAC domain-containing protein 19
3swp_D9e-46616022174NAC domain-containing protein 19
4dul_A8e-46616019171NAC domain-containing protein 19
4dul_B8e-46616019171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G140500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-160AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144249.10.0hypothetical protein PHAVU_007G140500g
TrEMBLV7BH910.0V7BH91_PHAVU; Uncharacterized protein
STRINGXP_007144249.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.17e-92NAC domain containing protein 53