PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G149700.1

Common Name

PHAVU_007G149700g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

TCP

Protein Properties

Length: 189aa MW: 20012.6 Da PI: 8.2861

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G149700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.7	1.1e-34	41	118	3	80
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80 + +++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg+++ ++ ++++ s Phvul.007G149700.1 41 AVTRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTVPSAPISSVATSI 118 55789**********************************************************777773332222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-30	45	146	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.04	46	100	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MTSHVVLQNF PHSETKLSTT TTSDSPPTAP SLAVTKRTSA AVTRSTKDRH TKVNGRGRRV 60 RMPPLCAARI FQLTRELGHR SDGETIEWLL RHAEPSIIAA TGSGTVPSAP ISSVATSIPS 120 SESSVSVPVV GGQGMFSMAP PSCRLDLSPP PGMEFAASNG YRHMPFTALL LQPATVEDNQ 180 NDESLGEH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G149700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007144360.1	1e-135	hypothetical protein PHAVU_007G149700g
Swissprot	Q9SJK7	3e-42	TCP11_ARATH; Transcription factor TCP11
TrEMBL	V7BET0	1e-134	V7BET0_PHAVU; Uncharacterized protein
STRING	XP_007144360.1	1e-134	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	1e-42	TCP family protein

Link Out ? help Back to Top
Phytozome	Phvul.007G149700.1
Entrez Gene	18625946