PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G158900.1
Common NamePHAVU_007G158900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 161aa    MW: 18254.2 Da    PI: 10.0945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G158900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000933557123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C++ Fs+   L  H  +H
  Phvul.007G158900.1 35 YECRTCNRKFSSFQALGGHRASH 57
                        99**********99999998887 PP
2zf-C2H213.50.0002180102123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg+ Fs    L  H+++H
  Phvul.007G158900.1  80 HECSICGEEFSLGQALGGHMKRH 102
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.183557IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-43553IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.85E-835102No hitNo description
PfamPF139125.5E-103558IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6793562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
PfamPF139121.6E-1079103IPR007087Zinc finger, C2H2
SMARTSM003550.1180102IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.49480102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MKRRREENVD LANCLILLSH PREVKPQNLL GPVEYECRTC NRKFSSFQAL GGHRASHKTP  60
KQDLKEEDKI VRLENKPKRH ECSICGEEFS LGQALGGHMK RHRISLNEGF SSINQVVVKV  120
PILKRSNSRK VICLDLNLTP LQNDLKLLFG DKAPKVDSFV *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G158900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-154AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144472.11e-114hypothetical protein PHAVU_007G158900g
SwissprotQ9SLD42e-44ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLV7BIV71e-113V7BIV7_PHAVU; Uncharacterized protein
STRINGXP_007144472.11e-113(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-47C2H2 family protein