PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G159000.1
Common NamePHAVU_007G159000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 154aa    MW: 16820.5 Da    PI: 10.1213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G159000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000252850123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ Fs+   L  H+ +H
  Phvul.007G159000.1 28 FQCKTCNRKFSSFQALGGHLASH 50
                        89************999999988 PP
2zf-C2H214.88.4e-057294123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++Cg+ Fs    L  H+r+H
  Phvul.007G159000.1 72 HECSICGQEFSLGQALGGHMRKH 94
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-102852IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1382855IPR007087Zinc finger, C2H2
SuperFamilySSF576678.82E-92894No hitNo description
SMARTSM003550.0442850IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-57096IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.2E-97196IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.9077299IPR007087Zinc finger, C2H2
SMARTSM003550.0677294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVAILKRQRE AESEEIKDLA KSFSPHEFQC KTCNRKFSSF QALGGHLASH KKPKLDGEEA  60
KDLSLGRKPK AHECSICGQE FSLGQALGGH MRKHKGSMNG GLSSSVIPKA PLLKRSNSSK  120
RVMCLELDLN LTPLENDLKL LFGNKAPTVH LSL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G159000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-126AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144473.11e-107hypothetical protein PHAVU_007G159000g
SwissprotQ9SLD42e-41ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLV7BF631e-106V7BF63_PHAVU; Uncharacterized protein
STRINGXP_007144473.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-43C2H2 family protein