PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G166100.1
Common NamePHAVU_007G166100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CO-like
Protein Properties Length: 342aa    MW: 38789.4 Da    PI: 6.9881
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G166100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.32.3e-06840234
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
                        ++r+C+ +++ ++ l+C+ ++  lC  C  ++H
  Phvul.007G166100.1  8 KQRTCDYCGDFKALLYCRADSAKLCFLCDRKIH 40
                        789*******88********************9 PP
2CCT64.82.5e-22295338144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R+ allRY+eK+ktR+++K+irYesRK++AesR RvKGrFvk +
  Phvul.007G166100.1 295 RDSALLRYREKKKTRRYDKHIRYESRKVRAESRMRVKGRFVKDE 338
                         899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-10754IPR000315B-box-type zinc finger
PROSITE profilePS5011910.367754IPR000315B-box-type zinc finger
CDDcd000211.67E-51051No hitNo description
PROSITE profilePS501199.8265097IPR000315B-box-type zinc finger
CDDcd000217.66E-55497No hitNo description
SMARTSM003360.25597IPR000315B-box-type zinc finger
PROSITE profilePS5101715.051295337IPR010402CCT domain
PfamPF062036.9E-17295337IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSAYPNQKQR TCDYCGDFKA LLYCRADSAK LCFLCDRKIH FPNQLFSKHS RTHLCDGCGD  60
SPASVLCYAE NSVFCHNCDC QSHNNRMLSQ EHQRRPLEGF SGCPSVTQML MILGLPEKSL  120
LSTEGESSHD DGLSELHVWN SPSVFGFEDL IASSSYKNHK GACGRQKEEI LSQLRELIKL  180
EPDLTHGEVD AEPQLQFENL STGFERDIEA NMFPSYEAGV FCWHGESSDR ANQIVPSDTS  240
VSDYSELASA KDPTFTIPAT HTYCNNQGKP SNYLKAENLS PTPKATPYEL TSHERDSALL  300
RYREKKKTRR YDKHIRYESR KVRAESRMRV KGRFVKDETQ K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G166100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-44AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
GenBankAP0150382e-44AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
GenBankAP0150392e-44AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144560.10.0hypothetical protein PHAVU_007G166100g
TrEMBLV7BFB50.0V7BFB5_PHAVU; Uncharacterized protein
STRINGXP_007144560.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.19e-72B-box type zinc finger protein with CCT domain