PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G170200.1
Common NamePHAVU_007G170200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 333aa    MW: 36781 Da    PI: 4.446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G170200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.7e-09198245355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++   +r+RR+ri + +  L ellP++        s a iL   ++Y+k+Lq
  Phvul.007G170200.1 198 EKARVTDRKRRQRIADNLKALHELLPNP-----AEGSQAYILDDIIDYVKYLQ 245
                         6678899********************8.....589****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-11194255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.82E-9194249No hitNo description
Gene3DG3DSA:4.10.280.101.7E-11195263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.525195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6197245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-4201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEEQSNEESP VQLTSCDTGG TTNDVSHSAE DHLIPNPKFF IAASSGRNES HWTCFPKPSH  60
NYVEYLSESS TYLPNTSTDY MMGGSYLPVG NINDGDVVNG PDRNFFYNDP GKVCAFKPIG  120
SSSNDLDIKK QVGFWRADEG EEVIKVETES SQNFLYAESH ALWTADSLGE KHNALHDPMV  180
MVGAPALLPK SGCSSSKEKA RVTDRKRRQR IADNLKALHE LLPNPAEGSQ AYILDDIIDY  240
VKYLQLQIKE QSGSRLQEES TAIPLVFHEG YGHYIDQQML NEPLEEIMGK LLEEHSAAAG  300
QLLESKGLFL LPMALVDDLS EAMQMFGESA LV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208DRKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G170200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-177AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144615.10.0hypothetical protein PHAVU_007G170200g
TrEMBLV7BFG90.0V7BFG9_PHAVU; Uncharacterized protein
STRINGXP_007144615.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF121642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.13e-21LJRHL1-like 2