PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G174900.1

Common Name

PHAVU_007G174900g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 445aa MW: 49588.8 Da PI: 9.1627

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G174900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Phvul.007G174900.1 73 FVCEICNKGFQRDQNLQLHRRGH 95 89*******************88 PP
2	zf-C2H2	12.4	0.00049	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Phvul.007G174900.1 149 WKCEKCSKIYAVQSDWKAHSKTC 171 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.11E-7	72	95	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	72	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	73	95	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.9E-5	73	95	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	73	95	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	114	144	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.0E-4	137	170	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.11E-7	144	169	No hit	No description
SMART	SM00355	170	149	169	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MFPSVMSNSN SLSEEATVSC GTRIGGLNHV VTTIISPQQP QKIKKKRNLP GNPDPDAEVI 60 ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNNKEVK KKAYVCPEPS 120 CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRKDSF ITHRAFCDAL AEESARLSAN QLATNTTNPL VQSLFLFPTQ QQHTNNNNTN 240 FINHWDPNPS PSNLPTLHNT IKPESHNFHT HIFNNSNISS PSLLLHHPPK TMITSPYRDL 300 HVRPSNAATS AHLSATALLQ KAATFGAAAI TGPSHVTPLS MAELGTVSTQ LDSVPPERYI 360 NIRDLKNSDG LTRDFLGLTN SDAVDVSIDV KDMLTFTGGS VEYNHYHHQP SYEHHHNSNS 420 LFKPQHGFGF LRTTTGPESW GNCE*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MFPSVMSNSN SLSEEATVSC GTRIGGLNHV VTTIISPQQP QKIKKKRNLP GNPDPDAEVI  60
ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNNKEVK KKAYVCPEPS  120
CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRKDSF ITHRAFCDAL AEESARLSAN QLATNTTNPL VQSLFLFPTQ QQHTNNNNTN  240
FINHWDPNPS PSNLPTLHNT IKPESHNFHT HIFNNSNISS PSLLLHHPPK TMITSPYRDL  300
HVRPSNAATS AHLSATALLQ KAATFGAAAI TGPSHVTPLS MAELGTVSTQ LDSVPPERYI  360
NIRDLKNSDG LTRDFLGLTN SDAVDVSIDV KDMLTFTGGS VEYNHYHHQP SYEHHHNSNS  420
LFKPQHGFGF LRTTTGPESW GNCE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-36	145	209	3	67	Zinc finger protein JACKDAW
5b3h_F	1e-36	145	209	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G174900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007144666.1	0.0	hypothetical protein PHAVU_007G174900g
Swissprot	O22759	1e-121	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	V7BGM2	0.0	V7BGM2_PHAVU; Uncharacterized protein
STRING	XP_007144666.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-111	indeterminate(ID)-domain 12

Link Out ? help Back to Top
Phytozome	Phvul.007G174900.1
Entrez Gene	18626204

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]