PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G177900.1
Common NamePHAVU_007G177900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 359aa    MW: 40334.4 Da    PI: 10.1312
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G177900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31292350360
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+k
  Phvul.007G177900.1 292 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 350
                         99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.0E-17243288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.4E-33279350IPR003657WRKY domain
PROSITE profilePS5081129.998285351IPR003657WRKY domain
SuperFamilySSF1182905.36E-27288350IPR003657WRKY domain
SMARTSM007744.7E-38290350IPR003657WRKY domain
PfamPF031065.6E-27292349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEEVEQANRT AVESCHRVLS LLSQPRDQVQ HRNLVMETGD AVVRFKKVVS LLHSGLGHAR  60
VRKLENPQAP FTHQSIFLDN PNCKTNNHHS KNLQLFQASF PDNSLQEMGS TIKHSLSLGQ  120
PSLELSSSGK SPLHLTQHAS SAHYHFFQQQ HHQRALLQQQ QQQQQQQQQQ QQQLKHQAEM  180
MFRRSNSGIN LNFDSTSCTP TMSSNRSFIS SLSIDGSVAN LDGGVFHLIG APHSSDQNSQ  240
QHKRKCSARG DEGSLKCGSS SRCHCSKKRK HRVKRPIKVP AISNKLADIP PDDYSWRKYG  300
QKPIKGSPHP RGYYKCSSMR GCPARKHVER CLEEPTMLIV TYEGEHNHPK LPTQSANA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-202863521075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G177900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753520.0EU375352.1 Glycine max transcription factor (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144701.10.0hypothetical protein PHAVU_007G177900g
SwissprotO043361e-124WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLV7BGP80.0V7BGP8_PHAVU; Uncharacterized protein
STRINGXP_007144701.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.12e-82WRKY DNA-binding protein 39