PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G179100.1
Common NamePHAVU_007G179100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 507aa    MW: 55473.7 Da    PI: 5.4187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G179100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11356402455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Phvul.007G179100.1 356 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 402
                         799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-4351227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.259352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17355421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-13355406No hitNo description
PfamPF000103.5E-9356402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17356421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.39E-6436505No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MMGEKFCLNE EDKGVLESVL GAEAVAFFIS ALSNNVFSSV VTPSAGADSS LRQRLCQLVE  60
GSKWNYAVFW QVAGLKSGGS ALIWGDGHCS DPKGKRSGVG KEDEQEVRKM VLQKLDACFG  120
GWVSKEANYA RLDRLSDLLM FYLSSMCYIF GYDSPCGPGS SFKSAKLIWT SDAAGCLNQL  180
ESRSFLGKVA GLQTVVFVPL KSGVVELGSN EVVSEEQGFV EMIKTAFGES SPGQAKVFPK  240
IFGHELSLGD TKSQSITISF SPKVEDDPGF TSDSFEVQAL GVNHTYGNSS NGTLGDSSEG  300
KMFPQLNQMM GGNFNAQARV PCLDLGNEDT SSIHADERKP RKRGRKPANG REEPLNHVEA  360
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITFITD LQMKIKVLEA EKNMFNNKDQ  420
RLSLPDMDFQ EREDDTVVTV RCPLDAHPVS DVVKTFREHQ IVAQDTNVST TDDKIIHTFS  480
IRTEGGEAAA IQLKEKLEAA LSKTLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27350424276Transcription factor MYC2
5gnj_B2e-27350424276Transcription factor MYC2
5gnj_E2e-27350424276Transcription factor MYC2
5gnj_F2e-27350424276Transcription factor MYC2
5gnj_G2e-27350424276Transcription factor MYC2
5gnj_I2e-27350424276Transcription factor MYC2
5gnj_M2e-27350424276Transcription factor MYC2
5gnj_N2e-27350424276Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337345RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G179100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144718.10.0hypothetical protein PHAVU_007G179100g
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLV7BFY70.0V7BFY7_PHAVU; Uncharacterized protein
STRINGXP_007144718.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-154bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]