PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G181900.1
Common NamePHAVU_007G181900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 338aa    MW: 37618 Da    PI: 5.0472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G181900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.5e-13137188155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  Phvul.007G181900.1 137 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YIQRGDQASIIGGAINFVKELE 188
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.14E-13135192No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13135192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.434136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-16136199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-9142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MCLPEGERDR ERAMALEAVV FPQSQDPFGS VKDFYNCTFL AATSPNWGDC EHININIDKE  60
EEQGSISTFL ENNTNQPNNY PYGGDWTSSS SSILPHLNEL QETTDPSSST QNLDSLTTRP  120
KRRRAKSRKN KEEIENQRMT HIAVERNRRK QMNEYLSVLR SLMPDSYIQR GDQASIIGGA  180
INFVKELEQR LHFLGSQKEG EGKSDAGGAT NMPFSEFFAF PQYSTSGGGG SDNSATIGED  240
VAEVKYGIAD IEVTMVESHA NLKIRSKKRP KQLLKLVSGL HTMRLTILHL NVTTTAEVVL  300
YSLSVKVEDD CKLGSVDDIA EAVYQTLDRI QQEAVLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137148RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G181900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934680.0BT093468.1 Soybean clone JCVI-FLGm-14K7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144754.10.0hypothetical protein PHAVU_007G181900g
SwissprotQ9C7T43e-82BH096_ARATH; Transcription factor bHLH96
TrEMBLV7BIG20.0V7BIG2_PHAVU; Uncharacterized protein
STRINGXP_007144754.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]