PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G185400.1
Common NamePHAVU_007G185400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GeBP
Protein Properties Length: 382aa    MW: 42306.9 Da    PI: 4.5774
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G185400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573121.44.5e-3897192297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         lfqrlw++eDei lLqG++d++a++g+s ++d+  fy+++k+++++ ++k+qlveK+rrLKkK+++ v+k+++gke+sf+++hd+ +fe+s
  Phvul.007G185400.1  97 LFQRLWTDEDEIGLLQGFLDYTAQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVVTKISDGKEVSFKSPHDKATFEIS 187
                         79***************************************************************************************** PP

              DUF573  93 kkiWg 97 
                         ++iW 
  Phvul.007G185400.1 188 RRIWS 192
                         ****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.0E-3498192IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MPMASDLNDA VFPEEDLDDD DETQEDEEED DEDDDVLDDD EPPHSVLAAV SLAAPCSTVS  60
QTLGTASTAI VVADSSPKRP RTEQIEEKKA LDDSRRLFQR LWTDEDEIGL LQGFLDYTAQ  120
RGSSHHNDTA LFYDQIKSKL QLGFNKNQLV EKLRRLKKKY RNVVTKISDG KEVSFKSPHD  180
KATFEISRRI WSNTAPITGP VEDDDEINPN PNSNPNPNPI FGQSAKTPLS RKRSRPRSEK  240
REFNDGSALN KDTNCIGNSN NNSNKDNENC NHRHNLQGVI EETVRSCVSP VLKELVIGGM  300
GLGSGFGFGG RGFGVGGGFS MNPLQMPMTL SPLNLGIGEM GMDEKWRKQQ ILELEVYSKR  360
LELVQNEIKV ALEELRSTGG G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682PKRPRTE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G185400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144806.10.0hypothetical protein PHAVU_007G185400g
SwissprotF4K5T42e-84STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLV7BH030.0V7BH03_PHAVU; Uncharacterized protein
STRINGXP_007144806.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-57DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]