PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G192100.1

Common Name

PHAVU_007G192100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

NAC

Protein Properties

Length: 276aa MW: 31498.5 Da PI: 6.7211

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G192100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.8	2.6e-50	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF P+deelv +yL kkv+++++ ++ e+d++ +ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++ Phvul.007G192100.1 10 LPPGFRFYPSDEELVLHYLYKKVTNEEVLK-GTLMEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRT 99 79**********************9655.78***********88888999******************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 v++ ++e+vg++ktLvfy++rap+g kt W+mhe+rle Phvul.007G192100.1 100 VFDPsTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 977888**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-60	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.784	10	156	IPR003441	NAC domain
Pfam	PF02365	3.1E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MGLRDIGASL PPGFRFYPSD EELVLHYLYK KVTNEEVLKG TLMEIDLHIC EPWQLPEVAK 60 LNANEWYFFS FRDRKYATGY RTNRATTSGY WKATGKDRTV FDPSTREVVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKGKAD NSAKLNSQLM YESTVPSLTL 180 ASSSPTNQTI GYNQLPHFSS SITTQNNNSF MGLLHFSRET NANSSSITQI SPKCDDGYGF 240 LWDMEMEENS FHDGVASNMV DGMRFEVDNN SVVLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	9	156	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	9	156	19	168	NAC domain-containing protein 19
3swm_B	1e-47	9	156	19	168	NAC domain-containing protein 19
3swm_C	1e-47	9	156	19	168	NAC domain-containing protein 19
3swm_D	1e-47	9	156	19	168	NAC domain-containing protein 19
3swp_A	1e-47	9	156	19	168	NAC domain-containing protein 19
3swp_B	1e-47	9	156	19	168	NAC domain-containing protein 19
3swp_C	1e-47	9	156	19	168	NAC domain-containing protein 19
3swp_D	1e-47	9	156	19	168	NAC domain-containing protein 19
4dul_A	1e-47	9	156	16	165	NAC domain-containing protein 19
4dul_B	1e-47	9	156	16	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G192100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-125	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007144886.1	0.0	hypothetical protein PHAVU_007G192100g
Swissprot	Q9S851	4e-62	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	V7BH79	0.0	V7BH79_PHAVU; Uncharacterized protein
STRING	XP_007144886.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	4e-95	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Phvul.007G192100.1
Entrez Gene	18626381

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]