PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G192900.1
Common NamePHAVU_007G192900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 268aa    MW: 29906.5 Da    PI: 8.1073
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G192900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT eEd++l++ ++++G ++W++ +   g+ R++k+c++rw +yl
  Phvul.007G192900.1 14 KGLWTREEDLILINHINKHGHKNWRALPTQAGLLRCGKSCRLRWINYL 61
                        678*****************************99************97 PP
2Myb_DNA-binding47.93.1e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T eE++ ++++++ lG++ W++Ia+++  gRt++++k+ w+++l
  Phvul.007G192900.1  67 RGNFTREEEDMIIQLHENLGNR-WSAIAAKLA-GRTDNEIKNVWNTHL 112
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129413.593961IPR017930Myb domain
SuperFamilySSF466892.16E-2811108IPR009057Homeodomain-like
SMARTSM007171.6E-121363IPR001005SANT/Myb domain
PfamPF002496.0E-141461IPR001005SANT/Myb domain
CDDcd001678.61E-111761No hitNo description
PROSITE profilePS5129424.06762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2665115IPR009057Homeodomain-like
SMARTSM007175.4E-1466114IPR001005SANT/Myb domain
PfamPF002495.6E-1467112IPR001005SANT/Myb domain
CDDcd001671.94E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRSPCSEGL GLNKGLWTRE EDLILINHIN KHGHKNWRAL PTQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TREEEDMIIQ LHENLGNRWS AIAAKLAGRT DNEIKNVWNT HLKKRSQQDK  120
DTKRNHSLVC TQISKQQPVK ALPTDHVIQT TEKKALSSPH CASSDVSTLT ASTTCDGSDH  180
KSVGAIHHQH HLPVKAESLD DDFWSQVLSP GNSGDTSSFP ATGPAERDFQ CPLSPSLTSK  240
GVHSSSAYDN VKFWYDVYMG EQELGEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G192900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-153AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144899.10.0hypothetical protein PHAVU_007G192900g
TrEMBLV7BIS30.0V7BIS3_PHAVU; Uncharacterized protein
STRINGXP_007144899.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2236644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-67myb domain protein 14