PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G195500.1

Common Name

PHAVU_007G195500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 218aa MW: 24912.4 Da PI: 6.0334

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G195500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Phvul.007G195500.1 33 YECVFCKRGFTTAQALGGHMNIH 55 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.79E-6	31	60	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.9E-4	31	59	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.99	33	60	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MEFSCQEDYS KSSSEEIDRS SEQNDEMGTG RSYECVFCKR GFTTAQALGG HMNIHRKDRA 60 NKAKPNFPPS TSTKVDDSNS YADLGLYSPS SNTTYLARGS YYSTLPDPEV DINYNYYHQL 120 YFPSHACAAK SPSHVQYSEV LCVENQRDPQ LLFGQDWRQR GLSLYTNPLC ARQNKDKTQN 180 NTEEDDLDLE LRLERWVKLE AERSRRSKIS IAWKLGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G195500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007144929.1	1e-164	hypothetical protein PHAVU_007G195500g
TrEMBL	V7BIU7	1e-162	V7BIU7_PHAVU; Uncharacterized protein
STRING	XP_007144929.1	1e-163	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1686	30	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	8e-16	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Phvul.007G195500.1
Entrez Gene	18626418