PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G196100.1

Common Name

PHAVU_007G196100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 520aa MW: 55588 Da PI: 8.9432

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G196100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Phvul.007G196100.1 91 FICEICNKGFQRDQNLQLHRRGH 113 89*******************88 PP
2	zf-C2H2	11.2	0.0012	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Phvul.007G196100.1 167 WKCDKCSKKYAVQSDWKAHSKIC 189 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.09E-6	90	113	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	90	113	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.845	91	113	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.3E-5	91	113	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	91	113	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	132	162	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.7E-4	155	188	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.09E-6	162	187	No hit	No description
SMART	SM00355	150	167	187	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MSNITSCDSG SFSTENTRED AAVKQKSEML GQFHSPHSLT STTTTNNSNG SNTNSQPPAP 60 VKKKRSLPGN PDPSAEVIAL SPNTLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK 120 QRTSTEVRKR VYVCPEPSCV HHNPARALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS 180 DWKAHSKICG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKANEGQL PKIGPNLQCQ 240 QIPNLVSSLP INTNIVPNPQ IGGTSEFNHA EHKHPLSLPH ELMPMPAPKP FNNTTTMAGT 300 VFSRSLSSTS PPSLQLSSNI FEENGLHLAA GSPHMSATAL LQKAAQMGAT VTDKTFSTNM 360 APPSFGVLQQ QPNGQSFMNQ YMQSGQHDAN VNISAQYNGF GANGISGGSV GMNGVDMFNA 420 ILDQSKALSK IIEQSNRSSS GGATNGGSSA INVGGSKGSG DVMTLDFLGI GGGGAGAGGA 480 HGNFYGGSQQ AENGAPDEVW RNWSSKNAGF ESFSATSSI*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MSNITSCDSG SFSTENTRED AAVKQKSEML GQFHSPHSLT STTTTNNSNG SNTNSQPPAP  60
VKKKRSLPGN PDPSAEVIAL SPNTLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRTSTEVRKR VYVCPEPSCV HHNPARALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS  180
DWKAHSKICG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKANEGQL PKIGPNLQCQ  240
QIPNLVSSLP INTNIVPNPQ IGGTSEFNHA EHKHPLSLPH ELMPMPAPKP FNNTTTMAGT  300
VFSRSLSSTS PPSLQLSSNI FEENGLHLAA GSPHMSATAL LQKAAQMGAT VTDKTFSTNM  360
APPSFGVLQQ QPNGQSFMNQ YMQSGQHDAN VNISAQYNGF GANGISGGSV GMNGVDMFNA  420
ILDQSKALSK IIEQSNRSSS GGATNGGSSA INVGGSKGSG DVMTLDFLGI GGGGAGAGGA  480
HGNFYGGSQQ AENGAPDEVW RNWSSKNAGF ESFSATSSI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	163	221	3	61	Zinc finger protein JACKDAW
5b3h_F	1e-33	163	221	3	61	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G196100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007144938.1	0.0	hypothetical protein PHAVU_007G196100g
Swissprot	Q9SCQ6	1e-119	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	V7BGH7	0.0	V7BGH7_PHAVU; Uncharacterized protein
STRING	XP_007144938.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-104	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Phvul.007G196100.1
Entrez Gene	18626425

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]