PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G201400.1
Common NamePHAVU_007G201400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 306aa    MW: 34897.4 Da    PI: 4.8969
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G201400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.36.9e-102472802255
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Phvul.007G201400.1 247 WPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRH 280
                         59*****************************885 PP
2ELK35.91.6e-12200221122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++Ll+KY+gyL+sL++EF+
  Phvul.007G201400.1 200 ELKEMLLHKYGGYLSSLRKEFL 221
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-205397IPR005540KNOX1
PfamPF037902.7E-205596IPR005540KNOX1
SMARTSM012561.8E-24100151IPR005541KNOX2
PfamPF037918.8E-23103150IPR005541KNOX2
SMARTSM011882.9E-6200221IPR005539ELK domain
PfamPF037891.3E-8200221IPR005539ELK domain
PROSITE profilePS5121310.982200220IPR005539ELK domain
PROSITE profilePS5007112.843220283IPR001356Homeobox domain
SMARTSM003891.8E-13222287IPR001356Homeobox domain
SuperFamilySSF466891.58E-20222293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28225285IPR009057Homeodomain-like
CDDcd000863.75E-12232284No hitNo description
PfamPF059202.2E-17240279IPR008422Homeobox KN domain
PROSITE patternPS000270258281IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MENFYKLNSL LSCSEDVVRE VNVNVSGTAA SELNLGLVAN NFLQLEEPES SERFIKTQIA  60
THPLYPSLVS AYIECRKVGA PPELASLLEE IARENHPTVP LREIGDDPEL DEFMESYCEV  120
LHRYTQELSK PFNEATLFLC SIESQLSNLC KGTLALPLNN NRSAFLSDEA AGTSEDEFSW  180
EKMEAVEVQE SSGSRPGDQE LKEMLLHKYG GYLSSLRKEF LKKRKKGKLP KEARRILLDW  240
WSTHYRWPYP TEEEKVQLSE MTGLDQKQIN NWFINQRKRH WKPSEDMRFA IMDGVNGSAI  300
GRGPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215224LRKEFLKKRK
2221225KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G201400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0940971e-136BT094097.1 Soybean clone JCVI-FLGm-18M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145002.10.0hypothetical protein PHAVU_007G201400g
SwissprotQ9FP298e-95KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLV7BKA10.0V7BKA1_PHAVU; Uncharacterized protein
STRINGXP_007145002.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.15e-81KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]