PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G205500.1
Common NamePHAVU_007G205500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18270.3 Da    PI: 9.9216
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G205500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.3e-151048240
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                        +i+n++ r++t+ +R++gi+KK  EL +LC++ ++ +i 
  Phvul.007G205500.1 10 FISNDMARKTTYKRRKKGIMKKVDELATLCGISACAVIS 48
                        8**********************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.9147IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-20181IPR002100Transcription factor, MADS-box
CDDcd002661.38E-20385No hitNo description
PRINTSPR004041.1E-5323IPR002100Transcription factor, MADS-box
PfamPF003196.0E-141050IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSRKKLKLAF ISNDMARKTT YKRRKKGIMK KVDELATLCG ISACAVISNP FDSETEVWPN  60
PEGVNKVMER FKNASVLNKS RNVNHESFMM QRIVKAQNEL KMQREENYEK EITLSMFQFM  120
QGQNLPSTVE EIKEIHKMIE KNIKEIENKL AALHCES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKLKLAFISNDMARKTTYKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G205500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145047.11e-113hypothetical protein PHAVU_007G205500g
TrEMBLV7BKE71e-111V7BKE7_PHAVU; Uncharacterized protein
STRINGXP_007145047.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.17e-35M-type_MADS family protein