PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G206000.1
Common NamePHAVU_007G206000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 725aa    MW: 77365.4 Da    PI: 6.8158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G206000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16463509455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Phvul.007G206000.1 463 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 509
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.6E-20456517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-20456519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-17462513No hitNo description
PfamPF000101.1E-13463509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MPLYELYRLA REKLGTENNG TRASDQCSSP ENDFFELVWE NGQISSQGQS SRVRRSPSCR  60
SLPSHCLPSH SPKGRDKDVG CGASKMGKFR DLDSGLSEIS MSVPSREIDF CQDEDVLPWF  120
DYAAMDGSLQ HDYGSDFLAT STSFTLLDKK SHTNVALRDS HKTSEEHENA FKGSSAEQVE  180
STGPKSSTSQ LYPPSLHHCQ TSFVSSRSRA SDITENNNTS NANQDATYGE ITNFLSSSSD  240
FSSPKGKKQE PPLPGNGSSS TIMNFSHFAR PAAMVRANLQ NIGLKSGLSS ARPDSMEIKN  300
NGAAATSSNP PESIVIDSSG ECSKELTMHC QQVVDQSRSR TDLNTSLSKA VEQNAVLSKQ  360
SEPACNESST KIDQIADQVL GDSGAKGQTT TEKSMEAAVA SSSVCSGNGA DRGSDEPNQN  420
LKRKKKTPMN LSAIDAEEES AGVKKAAGGR GGAGSKRTRA AEVHNLSERR RRDRINEKMR  480
ALQELIPNCN KVDKASMLDE AIEYLKTLQL QVQIMSMGAG LYMPPMMLPA GMQHMHAPHM  540
APFTPVGVGM HMGYGMGYGV GMPDMNGGSL RFPMIQVPQM PQMQGSHIPL AHMSGPTALH  600
EMARSNLPGL GLPGQGHPMP MPRAPTLPFS GGPIMNSPAL GLHACGSSGL VETVDSASAS  660
GLKDQMPNVG PLLKQSTGGR DSTSQMPTHS EAAVVQFDQS ALVQSSGHTS EANANGAVNP  720
CPRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467472ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G206000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311320.0KT031132.1 Glycine max clone HN_WYQ_58 bHLH transcription factor (Glyma20g22291.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145054.10.0hypothetical protein PHAVU_007G206000g
TrEMBLV7BJ540.0V7BJ54_PHAVU; Uncharacterized protein
STRINGXP_007145054.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-50phytochrome interacting factor 3