PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G212900.1
Common NamePHAVU_007G212900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 320aa    MW: 35881.7 Da    PI: 6.2909
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G212900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.85.3e-34166223259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp+vv++tYeg+H+h+
  Phvul.007G212900.1 166 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHP 223
                         8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381302.9E-1291319IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.4E-34150225IPR003657WRKY domain
SuperFamilySSF1182902.88E-29157225IPR003657WRKY domain
PROSITE profilePS5081131.881160225IPR003657WRKY domain
SMARTSM007742.0E-40165224IPR003657WRKY domain
PfamPF031062.0E-26166223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEKKEMVVKT EDAVGSSSIP CYNSNVYPFS NAFDFSEVEK SSLGFMELLG VQDYSPLLEL  60
PQLSTVSVPH HSTVKVPSDN GKESSEVLNH QPATPNSSSI SSASSDAVND EQKMTLDQVE  120
EDDDEEEEEE GQQKTKKQLK PKKTNQKRQR EPRFAFMTKS EVDHLEDGYR WRKYGQKAVK  180
NSPFPRSYYR CTSVSCNVKK RVERSFTDPS VVVTTYEGQH THPSPVMPRS GVSAGYATNL  240
ASVFPQAGNY LSQYQQQHHH QQLIFSTLSS LGFPYNDSSS PKNAGFTQER RLCNPGTNAF  300
LRDHGLLQDV VPSHMLKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-28155226778Probable WRKY transcription factor 4
2lex_A3e-28155226778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G212900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3226980.0DQ322698.1 Glycine max WRKY54 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145134.10.0hypothetical protein PHAVU_007G212900g
SwissprotO229002e-65WRK23_ARATH; WRKY transcription factor 23
TrEMBLV7BJB60.0V7BJB6_PHAVU; WRKY transcription factor
STRINGXP_007145134.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.15e-57WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]