PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G221400.1
Common NamePHAVU_007G221400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 520aa    MW: 55387 Da    PI: 9.8064
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G221400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-056486123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Phvul.007G221400.1 64 FICEICNKGFQRDQNLQLHRRGH 86
                        89*******************88 PP
2zf-C2H2140.00015140162123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Phvul.007G221400.1 140 WKCEKCSKKYAVQSDWKAHAKTC 162
                         58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-76386No hitNo description
Gene3DG3DSA:3.30.160.601.4E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8456486IPR007087Zinc finger, C2H2
SMARTSM003550.0226486IPR015880Zinc finger, C2H2-like
PfamPF121716.3E-56486IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355120105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.4E-5128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-7135160No hitNo description
SMARTSM00355140140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MQMMPGDPFS LSTSIGGFTQ EQNTNPNPKP NPPPKKKRNL PGTPDPDAEV IALSPKTLMA  60
TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLRQRSNKEV RKKVYICPEQ SCVHHDPARA  120
LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHAK TCGTREYKCD CGTLFSRKDS  180
FITHRAFCDA LAEESARLTS VTSTNLNFKS EEGGNVMNSQ PGLGGHGLIA AQGLQNVSGI  240
PQFGSHGFRL DFNGMEQPRP SLSLWLNQGN PQINNSNVNS NNNGPDVGPN YMSSCSSSGL  300
PDIVQMAQAN ALMGSTSMVS NFGVPAGSNS SSANLSLSSL PTGKRGEAGG TVVDLASIYN  360
SEGPNKNSKP ASPMSATALL QKAAQMGSTR STNPSIFSGS FGVMNSPSSQ TTSLNNNNNG  420
GAAMMLGSNT TAATDFTSLT HSSNSFDQLV MQTNAQLQSE PVKLKLRSSA AEHNLTRDFL  480
GVSGGGGGGG GGPQFLPQEL AKFASLGSPM GLSHFTSNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-39136205372Zinc finger protein JACKDAW
5b3h_F4e-39136205372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190102KLRQRSNKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G221400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145228.10.0hypothetical protein PHAVU_007G221400g
TrEMBLV7BHA60.0V7BHA6_PHAVU; Uncharacterized protein
STRINGXP_007145228.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-106C2H2-like zinc finger protein