PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G222800.1

Common Name

PHAVU_007G222800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Trihelix

Protein Properties

Length: 600aa MW: 69360.4 Da PI: 6.4861

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G222800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.5	4.3e-29	134	219	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ ++++++ k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+k+g+ +r+ + +++++f+qlea Phvul.007G222800.1 134 RWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKDGKAGRH--DGKHYRFFRQLEA 219 8***********************************999*************************985..5557*****85 PP
2	trihelix	46.4	1e-14	435	519	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 rW+++e+ L ++r e+e+r+ ++ +++ W+ v+ km+ g+ers+ +Ckekwe+++++ ++ + e +++ +e+s++c yf+ Phvul.007G222800.1 435 RWPESEITRLQQLRAEIETRFPYSEiSEEVSWDVVATKMACFGYERSALMCKEKWESISNYPREGDNKEDSKKcKENSRSCFYFK 519 8*******************876599******************************9999998888886377889999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.015	127	192	IPR017877	Myb-like domain
SMART	SM00717	0.1	131	194	IPR001005	SANT/Myb domain
CDD	cd12203	5.36E-20	134	199	No hit	No description
Pfam	PF13837	3.3E-20	134	220	No hit	No description
SMART	SM00717	0.95	432	495	IPR001005	SANT/Myb domain
Pfam	PF13837	3.5E-8	434	520	No hit	No description
PROSITE profile	PS50090	6.191	435	493	IPR017877	Myb-like domain
CDD	cd12203	2.70E-15	435	498	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MEMEDHHHHH HHQHQHQHQH QHQHHFGVND LRQVVNGPRT SNNNNYPSMP PHPTVELFPG 60 HRNLTPLPIP QHHQQHYEVM MFGRDIMPPS LHDFASTPHD SVAAAAAATM TLPTPPTFDA 120 EGAGCIGGDP STGRWPRQET LTLLEIRSRL DPKFKEANHK GPLWDEVSRI MSEEHGYQRS 180 GKKCREKFEN LYKYYKKTKD GKAGRHDGKH YRFFRQLEAL YGENSSTVSV PETNVVGSIH 240 FQASSHAPSQ TNQDKFQSHN SKNCDSLSLT NSTNFDTTSS DDDNDHHSME NESIEKRRKS 300 NSGRSWKVKI KDFIDSQMRK LVEKQKEWLD KLVKTLEEKE KERMLREEEW RKQEANRLER 360 EQEFWAKERA WIEARDAALM EALQKLTGRE IMKAETPNDG INITAAEVQN HSENQNNEDE 420 SIMLNSSNVI RGADRWPESE ITRLQQLRAE IETRFPYSEI SEEVSWDVVA TKMACFGYER 480 SALMCKEKWE SISNYPREGD NKEDSKKCKE NSRSCFYFKN NDDHRQSSLY DQGNAYCDDI 540 SDQGKEIERL QTNNSSLPSK SNAGNVDPSD SCFPFLMSTE SGNLWENYGL KLNKENQNH*

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MEMEDHHHHH HHQHQHQHQH QHQHHFGVND LRQVVNGPRT SNNNNYPSMP PHPTVELFPG  60
HRNLTPLPIP QHHQQHYEVM MFGRDIMPPS LHDFASTPHD SVAAAAAATM TLPTPPTFDA  120
EGAGCIGGDP STGRWPRQET LTLLEIRSRL DPKFKEANHK GPLWDEVSRI MSEEHGYQRS  180
GKKCREKFEN LYKYYKKTKD GKAGRHDGKH YRFFRQLEAL YGENSSTVSV PETNVVGSIH  240
FQASSHAPSQ TNQDKFQSHN SKNCDSLSLT NSTNFDTTSS DDDNDHHSME NESIEKRRKS  300
NSGRSWKVKI KDFIDSQMRK LVEKQKEWLD KLVKTLEEKE KERMLREEEW RKQEANRLER  360
EQEFWAKERA WIEARDAALM EALQKLTGRE IMKAETPNDG INITAAEVQN HSENQNNEDE  420
SIMLNSSNVI RGADRWPESE ITRLQQLRAE IETRFPYSEI SEEVSWDVVA TKMACFGYER  480
SALMCKEKWE SISNYPREGD NKEDSKKCKE NSRSCFYFKN NDDHRQSSLY DQGNAYCDDI  540
SDQGKEIERL QTNNSSLPSK SNAGNVDPSD SCFPFLMSTE SGNLWENYGL KLNKENQNH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G222800.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007145244.1	0.0	hypothetical protein PHAVU_007G222800g
Swissprot	Q9LZS0	1e-128	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	V7BJM8	0.0	V7BJM8_PHAVU; Uncharacterized protein
STRING	XP_007145244.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-115	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Phvul.007G222800.1
Entrez Gene	18626696

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]