PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G223400.1
Common NamePHAVU_007G223400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 453aa    MW: 51271.3 Da    PI: 4.5604
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G223400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.26.1e-34231152103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++++++d++l+ +isw ++g sfvv+d+ efa+ vLp++Fkh+nf+SFvRQLn+YgF+k+++++         weF ++ F+++kk+
  Phvul.007G223400.1  23 FLSKTFDLVDDPTLDPIISWGSTGFSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFFNEAFQRSKKH 104
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r++s+
  Phvul.007G223400.1 105 LLKNIQRRRST 115
                         ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.5E-5219112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.35E-3319112IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-3520112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.6E-3023112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MNPTDDNFPK PLEVLQMNPV PPFLSKTFDL VDDPTLDPII SWGSTGFSFV VWDPLEFARI  60
VLPRHFKHNN FSSFVRQLNT YGFRKIDTDK WEFFNEAFQR SKKHLLKNIQ RRRSTQFQQV  120
GSYIGIGSST EAGRSEVEVE IEKLRNERTM LMEEVVDLQQ EQRRTANRAG EVNQRLQSAE  180
QRQKQMVSFL AKLIQNPAFL ARLRHKKEQR EIDSPRVVRK FVKQHQHESG TVETLQEGQI  240
VRYQPDWRNI DMSSETPKLS QVSIEQSPHY LSQCLAGEMS GGAEDLTSQI ENIVTDDLAA  300
EHGITPPQEM MIGSSFGAED PLYKGKSVMS PSLELPPEYF TSFPEVLTQE KGFQDFSALG  360
TEDIIKLEDI WDSDLNLSGA GSTCGNELWG NPMNYEDVPE FGVTSGMSES DIWDIGSGSL  420
GIHKWPGDEP SIGEIDGQVG EPKEDRPQNL DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-232011226129Heat shock factor protein 1
5d5v_B5e-232011226129Heat shock factor protein 1
5d5v_D5e-232011226129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200208ARLRHKKEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G223400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145255.10.0hypothetical protein PHAVU_007G223400g
TrEMBLV7BH710.0V7BH71_PHAVU; Uncharacterized protein
STRINGXP_007145255.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-102heat shock transcription factor A3