PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G224800.1
Common NamePHAVU_007G224800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25943.2 Da    PI: 8.7123
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G224800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1955109357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         k+ ++t++ql+ Le+ F+k+ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k+
  Phvul.007G224800.1  55 KKKRLTSDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKN 109
                         56679************************************************95 PP
2HD-ZIP_I/II117.95.4e-3855145292
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kk+rl+++q+ +LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++Le+ev +L+  l+
  Phvul.007G224800.1  55 KKKRLTSDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKGMLR 145
                         9*************************************************************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.89250110IPR001356Homeobox domain
SuperFamilySSF466893.38E-1952120IPR009057Homeodomain-like
SMARTSM003892.2E-1853114IPR001356Homeobox domain
PfamPF000466.1E-1755109IPR001356Homeobox domain
CDDcd000865.80E-1655111No hitNo description
Gene3DG3DSA:1.10.10.608.9E-2257118IPR009057Homeodomain-like
PRINTSPR000313.4E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000313.4E-590106IPR000047Helix-turn-helix motif
PfamPF021833.9E-8110144IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEWNGSTRRY VPRPESSFSF LYNYNYTPYP GMEVKQQSLA ESSSSMEKMN CGNDKKKRLT  60
SDQLDSLESS FQKEIKLDPD RKMKLSKELG LQPRQIAVWF QNRRARWKNK QLEHLYDSLK  120
QEFDVISKEK QKLEEEVMKL KGMLREQASR TQVSTGYTEI SGEETVESTS EALRCSKRRT  180
LQPQQQQQQH QNIGEGNCSF TLEDYNTVPV LPYWPGVPYY P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G224800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0980090.0BT098009.1 Soybean clone JCVI-FLGm-11N12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145270.11e-164hypothetical protein PHAVU_007G224800g
SwissprotQ9LZR05e-54ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLV7BH871e-163V7BH87_PHAVU; Uncharacterized protein
STRINGXP_007145270.11e-164(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-55homeobox 51
Publications ? help Back to Top
  1. Zhao JL, et al.
    Micro-trichome as a class I homeodomain-leucine zipper gene regulates multicellular trichome development in Cucumis sativus.
    J Integr Plant Biol, 2015. 57(11): p. 925-35
    [PMID:25735194]
  2. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]