PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G230700.1
Common NamePHAVU_007G230700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 354aa    MW: 39957.8 Da    PI: 6.7306
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G230700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.93.6e-3281188199
                         EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                         f+k ltpsdv+k++rlv+pk++ae++         ++ + ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F
  Phvul.007G230700.1  81 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgggggDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDTGDVVLF 171
                         99*****************************9977334447889*********************************************** PP

                         EE-SSSEE..EEEEE-S CS
                  B3  83 kldgrsefelvvkvfrk 99 
                         ++++ +  +l+++++r+
  Phvul.007G230700.1 172 ERHRADAHRLFIGWRRR 188
                         *88779999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-4072194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-3276188IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-2979179No hitNo description
PfamPF023627.6E-2981188IPR003340B3 DNA binding domain
SMARTSM010196.5E-2681189IPR003340B3 DNA binding domain
PROSITE profilePS5086313.81781189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSINHYSMEL PETALWWPQQ QQQPILMEPT PNPSSTSWPS ADPLCLNLNN QNDDVEEDEE  60
EDRTTTTTQQ EETEDEKEPM FEKPLTPSDV GKLNRLVIPK QHAEKYFPLS GGGGGDSGEC  120
KGLLLSFEDE SGKCWRFRYS YWNSSQSYVL TKGWSRYVKD KRLDTGDVVL FERHRADAHR  180
LFIGWRRRRH GETSPVHVSS RAVGHGKSGN GNSKNEAAAA TGGGLGWTRG FYSAHPYPTH  240
QQHLHNHQPL PYQYDCLHAG RGSEGQRERR RAVGKSGSGS SSSSSSSRVL RLFGVNMECE  300
AEDDSGPSTL ECSYNSTNMP STQGTQNPHH FYHPHPPQPQ PHQILRHQPY YYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-48761883113B3 domain-containing transcription factor NGA1
5os9_B8e-48761883113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G230700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145337.10.0hypothetical protein PHAVU_007G230700g
TrEMBLV7BL550.0V7BL55_PHAVU; Uncharacterized protein
STRINGXP_007145337.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.26e-61B3 family protein