PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G240200.1
Common NamePHAVU_007G240200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 411aa    MW: 45025.4 Da    PI: 9.3379
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G240200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-17158207155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa a+++a+ k++g
  Phvul.007G240200.1 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAASAYDRAAIKFRG 207
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.25E-13158214No hitNo description
PfamPF008471.5E-8158207IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-15158216IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-16159215IPR001471AP2/ERF domain
PROSITE profilePS5103217.53159215IPR001471AP2/ERF domain
SMARTSM003801.1E-30159221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAMFDLNVDI NHAEADAGSS CAQKGAKLQN FPPEISDSRT SNSSVWNPAD EDSSNNSSPL  60
IFDILKKERG GSEFDAATEG NKEQTMAQKG EMVTRTLFPV TSSDKGGRVP DFKSGLWEKT  120
QLSNLSFPEP DGQNGLRTLQ QKLPHVRKNR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT AQAAASAYDR AAIKFRGVDA DINFSLRDYE EDLKQMRALS KEEFVLVLRR  240
QINGISRRST TYRGSLSLHK GGQGEPRMGP FIGKTFCPKS SEGKVEASFR PFSYKENIIA  300
NSSIAGTCHN LDLSLGISPS SKMLKNCDFG GEYSFGCMAS KIPEEIGTME KSMVGRIRSV  360
PLQKFSNLAS HICSNGSIGS RPLQSNAAAS SGFVSSSGCL ISHTSNQHTY *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G240200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310710.0KT031071.1 Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145449.10.0hypothetical protein PHAVU_007G240200g
SwissprotQ9SK031e-55RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLV7BK840.0V7BK84_PHAVU; Uncharacterized protein
STRINGXP_007145449.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15652911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.28e-59related to AP2.7