PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G241800.1
Common NamePHAVU_007G241800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 212aa    MW: 23762.6 Da    PI: 6.1487
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G241800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19117167255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdps   k +r++lg+f+t+ +Aaka++ a+ k++g
  Phvul.007G241800.1 117 RYRGVRRRP-WGKFAAEIRDPSR--KGTRVWLGTFDTEIDAAKAYDCAAFKMRG 167
                         8********.**********854..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.15E-31116175No hitNo description
PROSITE profilePS5103224.566117175IPR001471AP2/ERF domain
SMARTSM003803.2E-37117181IPR001471AP2/ERF domain
PfamPF008471.0E-13117167IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23117176IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-32117176IPR001471AP2/ERF domain
PRINTSPR003673.9E-13118129IPR001471AP2/ERF domain
PRINTSPR003673.9E-13157177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTTAEETSNL DLISQHLLGE NISNSFFSNL NPVKLEAPSS PEFDFSSYIS ENTSFFTFLE  60
GYDLVADMEF VDHKAMNSTS TPTIPISSKE PKKCNSPEPM VSSEEKAKKA EYDEAKRYRG  120
VRRRPWGKFA AEIRDPSRKG TRVWLGTFDT EIDAAKAYDC AAFKMRGQKA ILNFPLEAGE  180
SDPKPNSCGR KRRRESLELE LPQVQVHHGV S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-28116176161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G241800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145470.11e-157hypothetical protein PHAVU_007G241800g
TrEMBLV7BHU01e-156V7BHU0_PHAVU; Uncharacterized protein
STRINGXP_007145470.11e-157(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.17e-37ERF family protein