PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G243000.1

Common Name

PHAVU_007G243000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 227aa MW: 25243.6 Da PI: 8.508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G243000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	57	103	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRR+riN +++Lr+llP + K +Ka+ L k+ve +k+L Phvul.007G243000.1 57 RNHKEAEKRRRERINAHLNKLRTLLPCN-----SKTDKASLLAKVVERLKEL 103 58***********************8.....7*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.65	54	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-10	57	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.26E-11	57	106	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-13	58	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-14	58	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	60	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	1.19E-5	144	208	No hit	No description
Gene3D	G3DSA:3.30.70.260	5.5E-5	144	208	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MENSDDLFHF LSNTNDSFFP EPASSIMQQS FSSSFSYYPL QPFNAPPHQD KALAALRNHK 60 EAEKRRRERI NAHLNKLRTL LPCNSKTDKA SLLAKVVERL KELKQQMSEI TQSETFPSEN 120 DEISVLSTGG DGSGGDGRLI FKASLCCEDR SDLIPDLVGI LKSLHLTTLR AEIATLGGRT 180 RNVLVVATDK DRSVESIHFL QNSLHTLLQH NGASKRRRVV GPNFIV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	218	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G243000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-160	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007145485.1	1e-167	hypothetical protein PHAVU_007G243000g
Swissprot	Q9LET0	2e-67	BH107_ARATH; Putative transcription factor bHLH107
TrEMBL	V7BHV5	1e-165	V7BHV5_PHAVU; Uncharacterized protein
STRING	XP_007145485.1	1e-166	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6672	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	4e-67	bHLH family protein

Link Out ? help Back to Top
Phytozome	Phvul.007G243000.1
Entrez Gene	18626907

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]