PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G244400.1
Common NamePHAVU_007G244400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 216aa    MW: 24616.8 Da    PI: 10.3657
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G244400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-0585107123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C  C+k Fs++  L  H++ H
  Phvul.007G244400.1  85 FSCMFCNKKFSSPQALGGHQNAH 107
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-572111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.34E-684112No hitNo description
PROSITE profilePS5015711.01185112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSNEVFVGGG VESRKLKRKI EELSSDVDLE FSLSLSLGNT KMVAKSSSST FFGKSLKNHK  60
KTPNSASNPS ENSNHEVTVP KQFQFSCMFC NKKFSSPQAL GGHQNAHRPE RVVLRMEKDM  120
RTFGHGNHMF PHSSIPHHYP FHGSIPLYSR HNMHPTMAHF STMPWPHFVP TFGNQEFHDR  180
CIRRQQFGMN NPWGIVSQTP KNLYSRDVEF GFKHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G244400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145507.11e-160hypothetical protein PHAVU_007G244400g
TrEMBLV7BLN11e-158V7BLN1_PHAVU; Uncharacterized protein
STRINGXP_007145507.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142291217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-10zinc finger protein 2