PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G245000.1
Common NamePHAVU_007G245000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 237aa    MW: 26447 Da    PI: 9.1392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G245000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-0579101123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k F+++  L  H++ H
  Phvul.007G245000.1  79 FPCKFCSKKFPSSQALGGHQNAH 101
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-568105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.8E-676106No hitNo description
PROSITE profilePS5015711.07479106IPR007087Zinc finger, C2H2
PfamPF139122.4E-679103IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSDEFFGRVD ESRKLKRKIE EASSAEIVDS ELLLSMSLGN NNMVGESSSI CKTLKNPMDS  60
PKAVENPNHQ MIMPKQRQFP CKFCSKKFPS SQALGGHQNA HRRERVLSRI DREIDMGTFG  120
VGVHMYPYST MAHQHPLRGS PLPFYYEPNM HPLAQMSTMP WPLAPLHNTS ISGQRFGMGT  180
TTNLGGIETP QYHRGLGFGF DHNQVHHAFD PTNGASMPRP TLGGLMRNQY SGNQPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G245000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145517.11e-178hypothetical protein PHAVU_007G245000g
TrEMBLV7BLP21e-177V7BLP2_PHAVU; Uncharacterized protein
STRINGXP_007145517.11e-177(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142291217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.17e-13C2H2 family protein