PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G251900.1
Common NamePHAVU_007G251900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 224aa    MW: 25943.6 Da    PI: 8.0628
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G251900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.48.2e-32411331102
                         HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
        HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                         aFl k+y ++ed+++++++sw+++g++fvvl++ efa+++Lp+ F h nf+SF+RQL +YgF+kv +++         weF ++ F+kg+k
  Phvul.007G251900.1  41 AFLLKTYMLVEDASTNDVVSWNDDGTTFVVLQPAEFARDLLPTLFNHCNFSSFLRQLSTYGFRKVATSR---------WEFCNERFRKGEK 122
                         69****************************************************************999.........************* PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  92 ellekikrkks 102
                         ell++i+rkks
  Phvul.007G251900.1 123 ELLCQIRRKKS 133
                         *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.1E-4838131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.99E-3039131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-3339131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-2842131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-154265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-158092IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1593105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1707.5E-4132194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNCGVHHHQP SSISSLTSVS EMEEESETGL LQCMRKLSTP AFLLKTYMLV EDASTNDVVS  60
WNDDGTTFVV LQPAEFARDL LPTLFNHCNF SSFLRQLSTY GFRKVATSRW EFCNERFRKG  120
EKELLCQIRR KKSRVRKRQH TSNIDEDERF LVSAFSSDYA ILMDENKRLK KENGVLHSEL  180
TNMKRKCRDL LDLVTKYSCA MQEGVDQKPL SFRLRLEEVQ GER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-21401333107Heat shock factor protein 2
5d8l_B2e-21401333107Heat shock factor protein 2
5d8l_D2e-21401333107Heat shock factor protein 2
5d8l_F2e-21401333107Heat shock factor protein 2
5d8l_H2e-21401333107Heat shock factor protein 2
5hdk_A2e-21391337112Heat shock factor protein 2
5hdk_B2e-21391337112Heat shock factor protein 2
5hdk_C2e-21391337112Heat shock factor protein 2
5hdk_D2e-21391337112Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G251900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150415e-78AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145595.11e-166hypothetical protein PHAVU_007G251900g
SwissprotO222305e-56HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLV7BI511e-165V7BI51_PHAVU; Uncharacterized protein
STRINGXP_007145595.11e-166(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-58heat shock transcription factor B3