PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G255000.1

Common Name

PHAVU_007G255000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB_related

Protein Properties

Length: 919aa MW: 102748 Da PI: 5.7477

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G255000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	6.7e-09	856	909	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.......TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmg.......kgRtlkqcksrwqk 46 +WT+eE++ l ++v+++G + Wk I + k+Rt ++k++w + Phvul.007G255000.1 856 PWTAEEEDMLREGVQKFGFDdprKWKNILAFGShvfekvgKRRTSQDLKDKWKN 909 8************************9987777888888**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	3.32E-10	561	615	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	3.3E-10	564	615	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	8.751	565	614	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	1.0E-6	567	612	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	568	611	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS51294	9.733	849	915	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-12	850	916	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.23E-11	851	912	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-8	853	913	IPR001005	SANT/Myb domain
CDD	cd11660	1.92E-13	855	912	No hit	No description
Pfam	PF13921	1.3E-8	857	913	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence Send to blast
MDGGEDPSAL AWVWVIEALS ACKAISTPML QGLIDSAPVG MDKFGEITKE IVSLRCLEEL 60 PSSVVERVAS STSDSRARFD ISRGCQDVLQ EILNETPLSN LKMTGAELLK SDVYPFINHK 120 RAGNLKCHLE QLRQTILEGT HPHTDYLKER SGLFPRNNGY SVIVNDVKRD DHSAKEVGNS 180 TNTENMVGND ISVSLTLENG NKTSKEHLLD NNSSPSTRSR VYSADDYLTE HFDRKQVCLN 240 ECDDFCRTSK RVKFSASTSF ESKKEKPVSQ LKQEVSEHLT ERILLVSERG DHHVENNNKE 300 TLGGGSSEDI PNKCTVSKLC QPSSHIEVPR DESNTPFNDA LMLQPTFGAE NSKQLQVESI 360 PHVSLADGIL LEISGSKHRS KHEKDLQLKD PNDSQQQIAG VKAPDHTGNG CGVEKSGDIV 420 YQGEKISLEM EKQAEQNLCL KCNESDQLPI SDVNVIQSVV TECCLGMTTT LPTNDAKAEK 480 NQQIINLQQP KQTEPDIAAL NLSQEPVVCD KTIVGAVIGC EAEQSSDSDG YHNEKKCLEA 540 KKHEFLRSHF TVDQDFSAMN ELNKQNLCMK CNQGGQLLAC KTTTCPLMVH EDCLGSSVQL 600 DAEGNFFCPF CAYSRTISEY VEAKEKASLA RKDLTIFISK GKMSQAADNL LYEFRTQEHC 660 FSRKSSECEH IHVKNNKDDQ LTRCEDNRED HVGEHANEAN NLQFGRSEQQ NSSCREKENV 720 SNGSVEILRE EKIGEMRNAK NITGVRVEEN EVPTDHVDGH DVDTCTGEKT NNALVNKSNA 780 GYETPQEMTK QQAIDGATEP VCAHNTGKEE MSEIECDKHS TSSSRYSMRY RKHEMQCKPQ 840 ARPVFQGNQL RRKKIPWTAE EEDMLREGVQ KFGFDDPRKW KNILAFGSHV FEKVGKRRTS 900 QDLKDKWKNM CKAHSKSK*

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence Send to blast

MDGGEDPSAL AWVWVIEALS ACKAISTPML QGLIDSAPVG MDKFGEITKE IVSLRCLEEL  60
PSSVVERVAS STSDSRARFD ISRGCQDVLQ EILNETPLSN LKMTGAELLK SDVYPFINHK  120
RAGNLKCHLE QLRQTILEGT HPHTDYLKER SGLFPRNNGY SVIVNDVKRD DHSAKEVGNS  180
TNTENMVGND ISVSLTLENG NKTSKEHLLD NNSSPSTRSR VYSADDYLTE HFDRKQVCLN  240
ECDDFCRTSK RVKFSASTSF ESKKEKPVSQ LKQEVSEHLT ERILLVSERG DHHVENNNKE  300
TLGGGSSEDI PNKCTVSKLC QPSSHIEVPR DESNTPFNDA LMLQPTFGAE NSKQLQVESI  360
PHVSLADGIL LEISGSKHRS KHEKDLQLKD PNDSQQQIAG VKAPDHTGNG CGVEKSGDIV  420
YQGEKISLEM EKQAEQNLCL KCNESDQLPI SDVNVIQSVV TECCLGMTTT LPTNDAKAEK  480
NQQIINLQQP KQTEPDIAAL NLSQEPVVCD KTIVGAVIGC EAEQSSDSDG YHNEKKCLEA  540
KKHEFLRSHF TVDQDFSAMN ELNKQNLCMK CNQGGQLLAC KTTTCPLMVH EDCLGSSVQL  600
DAEGNFFCPF CAYSRTISEY VEAKEKASLA RKDLTIFISK GKMSQAADNL LYEFRTQEHC  660
FSRKSSECEH IHVKNNKDDQ LTRCEDNRED HVGEHANEAN NLQFGRSEQQ NSSCREKENV  720
SNGSVEILRE EKIGEMRNAK NITGVRVEEN EVPTDHVDGH DVDTCTGEKT NNALVNKSNA  780
GYETPQEMTK QQAIDGATEP VCAHNTGKEE MSEIECDKHS TSSSRYSMRY RKHEMQCKPQ  840
ARPVFQGNQL RRKKIPWTAE EEDMLREGVQ KFGFDDPRKW KNILAFGSHV FEKVGKRRTS  900
QDLKDKWKNM CKAHSKSK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G255000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007145628.1	0.0	hypothetical protein PHAVU_007G255000g
TrEMBL	V7BIA4	0.0	V7BIA4_PHAVU; Uncharacterized protein
STRING	XP_007145628.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3872	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-08	TRF-like 6

Link Out ? help Back to Top
Phytozome	Phvul.007G255000.1
Entrez Gene	18627031