PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G257100.1
Common NamePHAVU_007G257100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 384aa    MW: 41970.5 Da    PI: 7.2046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G257100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.3e-13315360655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  Phvul.007G257100.1 315 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 360
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-16312373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.71E-13313362No hitNo description
Gene3DG3DSA:4.10.280.102.4E-14314370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-10315360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDSHTHHHHH HHQDYQLHLH QNQPSSGLLR FRSAPSSLLS NLTPFVSFGG DTAASSSFQE  60
LEEKNNHNCC SEDLSSMNSH KGYGGGLPPH YPRHGSSSAT SSSSMEGSYG LVASMGMDHE  120
APNKGFGSGL LRQSSSPAGL FSNNNVSFQN GFVTMKGVGN YGGVNDNNGE LSPCISRLKN  180
HISFSPRNSS SLGMLYQISE IGSEDIEATS PDDDASHGGN DTQHFGPGFP YGSWSETPQL  240
CENLSGLKRG RSDNEKIFSE VQNGEPGTQV NVLSHHLSLP KTSAEMITME KLLQFPDSVP  300
CKTRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD KQTNTADMLD LAVEYIKDLQ  360
KQFKTLCDKR ANCKCSSMQK ADS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G257100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-172AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145653.10.0hypothetical protein PHAVU_007G257100g
SwissprotQ66GR33e-90BH130_ARATH; Transcription factor bHLH130
TrEMBLV7BIF50.0V7BIF5_PHAVU; Uncharacterized protein
STRINGXP_007145653.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]