PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G267100.1
Common NamePHAVU_007G267100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YA
Protein Properties Length: 316aa    MW: 33993 Da    PI: 6.9888
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G267100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.23.6e-30135190258
           CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          p YVNaKQy++I++RRq+Rak+  e+k+  k rkpy+heSRh hA+rRpRg+gGrF
  Phvul.007G267100.1 135 GPTYVNAKQYHGIIRRRQSRAKAVLENKM-VKRRKPYMHESRHLHAMRRPRGNGGRF 190
                         79***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-33132193IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.059133193IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-26136190IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.9E-23136158IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.9E-23167190IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MQTAYLKEHE GIVHNSVGQL SSATSAPWLN GLGSQPVCGD YCGQSKPFSL EFSNYVDQLA  60
GDDCKMLGDG QNPPATLAPQ SSVAEPPNHL ELGFNQPMIC APYPCMDQFC GLVSAYGPQI  120
PGRIMLPLNM ASDDGPTYVN AKQYHGIIRR RQSRAKAVLE NKMVKRRKPY MHESRHLHAM  180
RRPRGNGGRF LNTRNSSNEN GGNDVEGNQM GGLQFLSSAS QSSEMMQSDV GMHSPMETDQ  240
YSPNMSSSEV SSMYSREGFD GFSVHPLGSS SVHPLGSSSV HPLGSSSVHP LGSSVHSIAD  300
MIGSGNGITM PTRWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-17136194462NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148167RRRQSRAKAVLENKMVKRRK
2148168RRRQSRAKAVLENKMVKRRKP
3149168RRQSRAKAVLENKMVKRRKP
4161167KMVKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G267100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150419e-62AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145780.10.0hypothetical protein PHAVU_007G267100g
RefseqXP_007145781.10.0hypothetical protein PHAVU_007G267100g
TrEMBLV7BL450.0V7BL45_PHAVU; Uncharacterized protein
STRINGXP_007145780.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.16e-45nuclear factor Y, subunit A2