PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G267900.1
Common NamePHAVU_007G267900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 650aa    MW: 71444.8 Da    PI: 8.1691
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G267900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-093583951954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Phvul.007G267900.1 358 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 395
                         554459******************************88 PP
2BELL122.12.4e-39222293172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erqe+q+kkakL+++l+eV++rY+qy++q+q+v ssFe+vag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  Phvul.007G267900.1 222 ERQEIQMKKAKLINMLDEVEQRYRQYHNQMQIVTSSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQI 293
                         79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-63152291IPR006563POX domain
PfamPF075261.5E-49157290IPR006563POX domain
PROSITE profilePS5007112.195336399IPR001356Homeobox domain
CDDcd000869.46E-12339400No hitNo description
SMARTSM003895.3E-9339403IPR001356Homeobox domain
SuperFamilySSF466897.27E-17340406IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-29342405IPR009057Homeodomain-like
PfamPF059202.6E-18356395IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MATYFQSNPK IQSGADGLQT LVLMNSDYVQ YSDAPPPHHG GNHLFLNSAA TVANNTSLLN  60
LPHAPSPHTQ QFVGVPLSAT AQEPPPPMPH DVSALHGFLP RMQYNLWNTI DPSTAAREVP  120
RASQGLSLSL HGEEVLPSSS SASGASNGGG VVGIQSVLLS SKYLKATQEL LDEVVNVNSG  180
IKIEQAKKSF EKTKVVGESS TAASGDGGEG SGKRSSELST TERQEIQMKK AKLINMLDEV  240
EQRYRQYHNQ MQIVTSSFEQ VAGIGSARTY TALALQTISK QFRCLKDAIT GQIRAANRSL  300
GEEDCFGTKV EGSRLKYVDH HLRQQRAIQQ LGMIHHNAWR PQRGLPERSV SVLRAWLFEH  360
FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYLEEMK EHELNGSEEK  420
SSKSGEDPAM KNSTPREKHP TSEIESKSFS SKQDVSKSQN NSMASTSPST SPIGGRNVKN  480
QFSFIGSSTQ GSPKKARNHE ILPSPNRASS MNMDVKMNEG NNEQQVSMDE RQSRDGYSFM  540
GSQTNFTSGF GQYPMEEIGR FDAEQFTPRF SGNGVSLTLG LPHCDTLSGT HQTFLPNQNI  600
QLGRGLDIGQ PNQFGVLNNS TSHSSAAYES MNMQNPKRFA AQLVLDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16345403563Homeobox protein Meis2
3k2a_B4e-16345403563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G267900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145789.10.0hypothetical protein PHAVU_007G267900g
SwissprotQ9SJ561e-171BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLV7BL770.0V7BL77_PHAVU; Uncharacterized protein
STRINGXP_007145789.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-166BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]